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The ribosome-bound quality control complex remains associated to aberrant peptides during their proteasomal targeting and interacts with Tom1 to limit protein aggregation

Quentin Defenouillère , Abdelkader Namane , John Mouaikel , Alain Jacquier , Micheline Fromont-Racine
Molecular Biology of the Cell, 2017, 28 (9), pp.1165-1176. ⟨10.1091/mbc.E16-10-0746⟩
Article dans une revue pasteur-02861913v1
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The Toxicity of a Novel Antifungal Compound Is Modulated by Endoplasmic Reticulum-Associated Protein Degradation (ERAD) Components

Shriya S Raj , Karthik Krishnan , David S Askew , Olivier S Helynck , Peggy Suzanne , et al.
Antimicrobial Agents and Chemotherapy, 2016, 60 (3), pp.1438-1449. ⟨10.1128/AAC.02239-15⟩
Article dans une revue pasteur-01427574v1
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Impact of protein-protein interactions and phosphorylation on RNA decapping for nonsense mediated mRNA decay (NMD)

Agathe Gilbert
Biochemistry [q-bio.BM]. Sorbonne Université, 2022. English. ⟨NNT : 2022SORUS386⟩
Thèse tel-04265647v1
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How cells kill a "killer" messenger

Cosmin Saveanu , Alain Jacquier
eLife, 2016, 5, pp.e16076. ⟨10.7554/eLife.16076⟩
Article dans une revue pasteur-01404013v1
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Quantitative global studies reveal differential translational control by start codon context across the fungal kingdom

Edward W J Wallace , Corinne Maufrais , Jade Sales-Lee , Laura R Tuck , Luciana de Oliveira , et al.
Nucleic Acids Research, 2020, 48 (5), pp.2312-2331. ⟨10.1093/nar/gkaa060⟩
Article dans une revue pasteur-02651962v1

A specialised SKI complex assists the cytoplasmic RNA exosome in the absence of direct association with ribosomes

Elodie Zhang , Varun Khanna , Estelle Dacheux , Abdelkader Namane , Antonia Doyen , et al.
EMBO Journal, 2019, 38 (14), pp.e100640. ⟨10.15252/embj.2018100640⟩
Article dans une revue hal-02175007v1
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Cdc48-associated complex bound to 60S particles is required for the clearance of aberrant translation products

Quentin Defenouillere , Yanhua Yao , John Mouaikel , Abdelkader Namane , Aurélie Galopier , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (13), pp.5046--5051. ⟨10.1073/pnas.1221724110⟩
Article dans une revue pasteur-01404018v1
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Homologous Recombination and the Formation of Complex Genomic Rearrangements

Aurèle Piazza , Wolf-Dietrich Heyer
Trends in Cell Biology, 2019, 29 (2), pp.135-149. ⟨10.1016/j.tcb.2018.10.006⟩
Article dans une revue hal-02999807v1
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Interaction entre protéines et acides nucléiques et régulation de l’expression des gènes

Gwenaël Badis
Génomique, Transcriptomique et Protéomique [q-bio.GN]. Sorbonne Université, 2019
HDR tel-04048246v1

The puzzling construction of the conidial outer layer of Aspergillus fumigatus

Isabel Valsecchi , Vincent Dupres , Jean-Philippe Michel , Magalie I Duchateau , Mariette Matondo , et al.
Cellular Microbiology, 2019, 21 (5), pp.e12994. ⟨10.1111/cmi.12994⟩
Article dans une revue pasteur-02306662v1
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Composition and Dynamics of Protein Complexes Measured by Quantitative Mass Spectrometry of Affinity-Purified Samples

Abdelkader Namane , Cosmin Saveanu
Frédéric Devaux. Yeast Functional Genomics, 2477, Springer US, pp.225-236, 2022, Methods in Molecular Biology, 978-1-0716-2257-5 (ebook). ⟨10.1007/978-1-0716-2257-5_13⟩
Chapitre d'ouvrage pasteur-04042946v1
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The p21-activated protein kinase inhibitor Skb15 and its budding yeast homologue are 60S ribosome assembly factors.

Cosmin Saveanu , Jean-Claude Rousselle , Pascal Lenormand , Abdelkader Namane , Alain Jacquier , et al.
Molecular and Cellular Biology, 2007, 27 (8), pp.2897-909. ⟨10.1128/MCB.00064-07⟩
Article dans une revue pasteur-01404696v1
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Systematic determination of transcription factor DNA-binding specificities in yeast

Lourdes Peña-Castillo , Gwenaël Badis
Frédéric Devaux. Yeast Functional Genomics, 1361, Humana Press, pp.203-225, 2016, Methods in Molecular Biology, 978-1-4939-3079-1. ⟨10.1007/978-1-4939-3079-1_12⟩
Chapitre d'ouvrage hal-02356251v1
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Synergy of the antibiotic colistin with echinocandin antifungals in Candida species.

Ute Zeidler , Marie-Elisabeth Bougnoux , Alexandru Lupan , Olivier Helynck , Antonia Doyen , et al.
Journal of Antimicrobial Chemotherapy, 2013, 68 (6), pp.1285-96. ⟨10.1093/jac/dks538⟩
Article dans une revue pasteur-00849830v1
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Investigation of RNA metabolism through large-scale genetic interaction profiling in yeast

Laurence Decourty , Christophe Malabat , Emmanuel Frachon , Alain Jacquier , Cosmin Saveanu
Nucleic Acids Research, 2021, pp.8535-8555. ⟨10.1093/nar/gkab680⟩
Article dans une revue hal-03320796v1
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Mécanismes de la dégradation des ARN dépendants ou indépendants de la déadénylation

Léna Audebert
Biochimie, Biologie Moléculaire. Sorbonne Université, 2022. Français. ⟨NNT : 2022SORUS374⟩
Thèse tel-03943917v1
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Unusual SMG suspects recruit degradation enzymes in nonsense‐mediated mRNA decay

Agathe Gilbert , Cosmin Saveanu
BioEssays, 2022, pp.2100296. ⟨10.1002/bies.202100296⟩
Article dans une revue pasteur-03606359v1
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Self-assembly of the general membrane-remodeling protein PVAP into sevenfold virus-associated pyramids

Bertram Daum , Tessa E. F. Quax , Martin Sachse , Deryck J. Mills , Julia Reimann , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2014, 111 (10), pp.3829--3834. ⟨10.1073/pnas.1319245111⟩
Article dans une revue pasteur-01404016v1
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Identification of Links Between Cellular Pathways by Genetic Interaction Mapping (GIM).

Christophe Malabat , Cosmin Saveanu
Frederic Devaux. Methods in Molecular Biology (1064-3745), 1361, Humana Press, pp.325-43, 2016, Yeast Functional Genomics: Methods and Protocols, 978-1-4939-3078-4. ⟨10.1007/978-1-4939-3079-1_18⟩
Chapitre d'ouvrage pasteur-01427613v1

Extensive degradation of RNA precursors by the exosome in wild-type cells.

Rajani Kanth Gudipati , Zhenyu Xu , Alice Lebreton , Bertrand Séraphin , Lars M Steinmetz , et al.
Molecular Cell, 2012, 48 (3), pp.409-21. ⟨10.1016/j.molcel.2012.08.018⟩
Article dans une revue hal-01350901v1
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Rôle de la transcription pervasive antisens chez Saccharomyces cerevisiae dans la régulation de l'expression des gènes

Alicia Chery
Biologie moléculaire. Université Pierre et Marie Curie - Paris VI, 2017. Français. ⟨NNT : 2017PA066191⟩
Thèse tel-01662409v1
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Antisense transcriptional interference mediates condition-specific gene repression in budding yeast

Alicia Nevers , Antonia Doyen , Christophe Malabat , Bertrand Néron , Thomas Kergrohen , et al.
Nucleic Acids Research, 2018, 46 (12), pp.6009-6025. ⟨10.1093/nar/gky342⟩
Article dans une revue hal-02349600v1
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Deadenylation rate is not a major determinant of RNA degradation in yeast

Léna Audebert , Frank Feuerbach , Laurence Decourty , Abdelkader Namane , Emmanuelle Permal , et al.
2023
Pré-publication, Document de travail hal-04051068v1
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mRNA Degradation and Decay

Micheline Fromont-Racine , Cosmin Saveanu
Fungal RNA biology, Springer, pp.159-193, 2014, 978-3-319-05686-9 (Print) 978-3-319-05687-6 (Online). ⟨10.1007/978-3-319-05687-6_7⟩
Chapitre d'ouvrage pasteur-01496708v1
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Structural and functional insights into CWC27/CWC22 heterodimer linking the exon junction complex to spliceosomes

Virginia Busetto , Isabelle Barbosa , Jérôme Basquin , Emélie Marquenet , Rémi Hocq , et al.
Nucleic Acids Research, 2020, 48 (10), pp.5670-5683. ⟨10.1093/nar/gkaa267⟩
Article dans une revue pasteur-02862504v1
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UPF1-like helicase grip on nucleic acids dictates processivity

Joanne Kanaan , Saurabh Raj , Laurence Decourty , Cosmin Saveanu , Vincent Croquette , et al.
Nature Communications, 2018, 9 (1), pp.3752. ⟨10.1038/s41467-018-06313-y⟩
Article dans une revue hal-01878957v1
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A SKI subcomplex specifically required for the degradation of ribosome-free RNA regions

Elodie Zhang , Varun Khanna , Abdelkader Namane , Antonia Doyen , Estelle Dacheux , et al.
2021
Pré-publication, Document de travail pasteur-03440988v1
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Brr2p carboxy-terminal Sec63 domain modulates Prp16 splicing RNA helicase.

Olivier Cordin , Daniela Hahn , Ross Alexander , Amit Gautam , Cosmin Saveanu , et al.
Nucleic Acids Research, 2014, 42 (22), pp.13897-910. ⟨10.1093/nar/gku1238⟩
Article dans une revue pasteur-01427502v1

The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae

Claire Torchet , Gwenaël Badis , Frédéric Devaux , Ginny Costanzo , Michel Werner , et al.
RNA, 2005, 11 (6), pp.928-938. ⟨10.1261/rna.2100905⟩
Article dans une revue hal-03032770v1

The cryo-EM structure of a ribosome–Ski2-Ski3-Ski8 helicase complex

Christian Schmidt , Eva Kowalinski , Vivekanandan Shanmuganathan , Quentin Defenouillère , Katharina Braunger , et al.
Science, 2016, 354 (6318), pp.1431-1433. ⟨10.1126/science.aaf7520⟩
Article dans une revue pasteur-03431216v1