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Journal Articles Nature Chemical Biology Year : 2021

A community resource for paired genomic and metabolomic data mining

Michelle A. Schorn (1) , Stefan Verhoeven (2) , Lars Ridder (2) , Florian Huber (2) , Deepa D. Acharya (3) , Alexander A. Aksenov (4) , Gajender Aleti (4) , Jamshid Amiri Moghaddam (5) , Allegra T. Aron (4) , Saefuddin Aziz (6, 7) , Anelize Bauermeister (4, 8) , Katherine D. Bauman (4) , Martin Baunach (9) , Christine Beemelmanns (5) , J. Michael Beman (10) , María Victoria Berlanga-Clavero (11) , Alex A. Blacutt (12) , Helge B. Bode (13, 14, 15) , Anne Boullie (16) , Asker Brejnrod (4) , Tim S. Bugni (3) , Alexandra Calteau (17) , Liu Cao (18) , Víctor J. Carrión (19, 20) , Raquel Castelo-Branco (21, 22) , Shaurya Chanana (3) , Alexander B. Chase (4) , Marc G. Chevrette (3) , Leticia V. Costa-Lotufo (8) , Jason M. Crawford (23, 24) , Cameron R. Currie (3) , Bart Cuypers (25, 26) , Tam Dang (27) , Tristan de Rond (4) , Alyssa M. Demko (4) , Elke Dittmann (9) , Chao Du (19) , Christopher Drozd (12) , Jean-Claude Dujardin (26) , Rachel J. Dutton (4) , Anna Edlund (28, 4) , David P. Fewer (22) , Kyo Bin Kang , Chung Sub Kim , Ki Hyun Kim , Seoung Rak Lee , Johannes Sørensen , Neha Garg , Julia M Gauglitz , Emily C Gentry , Lena Gerwick , Evgenia Glukhov , Harald Gross , Muriel Gugger (16) , Dulce G Guillén Matus , Eric J N Helfrich , Benjamin-Florian Hempel , Jae-Seoun Hur , Marianna Iorio , Paul R Jensen , Kyo Bin Kang , Leonard Kaysser , Neil L Kelleher , Chung Sub Kim , Ki Hyun Kim , Irina Koester , Gabriele M König , Tiago Leao , Seoung Rak Lee , Yi-Yuan Lee , Xuanji Li , Jessica C Little , Katherine N Maloney , Daniel Männle , Christian Martin H. , Andrew C Mcavoy , Willam W Metcalf , Hosein Mohimani , Carlos Molina-Santiago , Bradley S Moore , Michael W Mullowney , Mitchell Muskat , Louis-Félix Nothias , Ellis O’neill , Elizabeth Parkinson , Daniel Petras , Jörn Piel , Emily Pierce , Karine Pires , Raphael Reher , Diego Romero , M. Caroline Caroline Roper , Michael Rust , Hamada Saad , Carmen Saenz , Laura M Sanchez , Christian Martin (29) , Søren Johannes Sørensen , Margherita Sosio , Roderich D Süssmuth , Douglas Sweeney , Kapil Tahlan , Regan J Thomson , Nicholas J Tobias , Amaro E Trindade-Silva , Gilles P van Wezel , Mingxun Wang , Kelly C Weldon , Fan Zhang , Nadine Ziemert , Katherine R Duncan , Max Crüsemann , Simon Rogers , Pieter C Dorrestein (4) , Marnix H Medema (1) , Justin J J van Der Hooft (1)
1 WUR - Wageningen University and Research [Wageningen]
2 Netherlands eScience Center
3 University of Wisconsin-Madison
4 UC San Diego - University of California [San Diego]
5 Leibniz Institute for Natural Product Research and Infection Biology (Hans Knoell Institute)
6 Eberhard Karls Universität Tübingen = University of Tübingen
7 Jenderal Soedirman University [Purwokerto, Indonesia]
8 USP - Universidade de São Paulo = University of São Paulo
9 University of Potsdam = Universität Potsdam
10 UC Merced - University of California [Merced]
11 Universidad de Málaga [Málaga] = University of Málaga [Málaga]
12 UC Riverside - University of California [Riverside]
13 Goethe University Frankfurt
14 Senckenberg – Leibniz Institution for Biodiversity and Earth System Research - Senckenberg Gesellschaft für Naturforschung
15 Max Planck Institute for Terrestrial Microbiology
16 Collection des Cyanobactéries
17 LABGeM - Analyse Bio-Informatique pour la Génomique et le Métabolisme
18 CMU - Carnegie Mellon University [Pittsburgh]
19 Universiteit Leiden = Leiden University
20 NIOO-KNAW - Netherlands Institute of Ecology
21 Universidade do Porto = University of Porto
22 Helsingin yliopisto = Helsingfors universitet = University of Helsinki
23 Yale University [New Haven]
24 YSM - Yale School of Medicine [New Haven, Connecticut]
25 UA - University of Antwerp
26 ITM - Institute of Tropical Medicine [Antwerp]
27 TUB - Technical University of Berlin / Technische Universität Berlin
28 JCVI - J. Craig Venter Institute [La Jolla, USA]
29 Instituto de Investigaciones Científicas y Servicios de Alta Tecnología [Panama]
Kyo Bin Kang
  • Function : Author
Chung Sub Kim
  • Function : Author
Ki Hyun Kim
  • Function : Author
Seoung Rak Lee
  • Function : Author
Johannes Sørensen
  • Function : Author
Neha Garg
  • Function : Author
Julia M Gauglitz
  • Function : Author
Emily C Gentry
  • Function : Author
Lena Gerwick
  • Function : Author
Evgenia Glukhov
  • Function : Author
Harald Gross
Dulce G Guillén Matus
  • Function : Author
Eric J N Helfrich
  • Function : Author
Benjamin-Florian Hempel
  • Function : Author
Jae-Seoun Hur
  • Function : Author
Marianna Iorio
  • Function : Author
Paul R Jensen
  • Function : Author
Kyo Bin Kang
  • Function : Author
Leonard Kaysser
  • Function : Author
Neil L Kelleher
  • Function : Author
Chung Sub Kim
  • Function : Author
Ki Hyun Kim
  • Function : Author
Irina Koester
  • Function : Author
Gabriele M König
  • Function : Author
Tiago Leao
  • Function : Author
Seoung Rak Lee
  • Function : Author
Yi-Yuan Lee
  • Function : Author
Xuanji Li
  • Function : Author
Jessica C Little
  • Function : Author
Katherine N Maloney
  • Function : Author
Daniel Männle
  • Function : Author
Christian Martin H.
  • Function : Author
Andrew C Mcavoy
  • Function : Author
Willam W Metcalf
  • Function : Author
Hosein Mohimani
  • Function : Author
Carlos Molina-Santiago
  • Function : Author
Bradley S Moore
  • Function : Author
Michael W Mullowney
  • Function : Author
Mitchell Muskat
  • Function : Author
Louis-Félix Nothias
  • Function : Author
Ellis O’neill
  • Function : Author
Elizabeth Parkinson
  • Function : Author
Daniel Petras
  • Function : Author
Jörn Piel
  • Function : Author
Emily Pierce
  • Function : Author
Karine Pires
  • Function : Author
Raphael Reher
  • Function : Author
Diego Romero
  • Function : Author
M. Caroline Caroline Roper
  • Function : Author
Michael Rust
Hamada Saad
  • Function : Author
Carmen Saenz
  • Function : Author
Laura M Sanchez
  • Function : Author
Søren Johannes Sørensen
  • Function : Author
Margherita Sosio
  • Function : Author
Roderich D Süssmuth
  • Function : Author
Douglas Sweeney
  • Function : Author
Kapil Tahlan
  • Function : Author
Regan J Thomson
  • Function : Author
Nicholas J Tobias
  • Function : Author
Amaro E Trindade-Silva
  • Function : Author
Gilles P van Wezel
  • Function : Author
Mingxun Wang
  • Function : Author
Kelly C Weldon
  • Function : Author
Fan Zhang
Nadine Ziemert
  • Function : Author
Katherine R Duncan
  • Function : Author
Max Crüsemann
  • Function : Author
Simon Rogers
  • Function : Author

Abstract

Genomics and metabolomics are widely used to explore specialized metabolite diversity. The Paired Omics Data Platform is a community initiative to systematically document links between metabolome and (meta)genome data, aiding identification of natural product biosynthetic origins and metabolite structures.
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pasteur-03153704 , version 1 (26-02-2021)

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Michelle A. Schorn, Stefan Verhoeven, Lars Ridder, Florian Huber, Deepa D. Acharya, et al.. A community resource for paired genomic and metabolomic data mining. Nature Chemical Biology, 2021, ⟨10.1038/s41589-020-00724-z⟩. ⟨pasteur-03153704⟩
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