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Structure: Internal structure identifier : 544198
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Strainberry: automated strain separation in low-complexity metagenomes using long reads

Riccardo Vicedomini , Christopher Quince , Aaron Darling , Rayan Chikhi
Nature Communications, 2021, 12 (1), pp.4485. ⟨10.1038/s41467-021-24515-9⟩
Journal articles hal-03412884v1

Taxonomy of prokaryotic viruses: 2018-2019 update from the ICTV Bacterial and Archaeal Viruses Subcommittee

Evelien Adriaenssens , Matthew Sullivan , Petar Knezevic , Leonardo J. van Zyl , B. Sarkar , et al.
Archives of Virology, 2020, 165 (5), pp.1253-1260. ⟨10.1007/s00705-020-04577-8⟩
Journal articles pasteur-02568508v1
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Recent changes to virus taxonomy ratified by the International Committee on Taxonomy of Viruses (2022)

Peter J Walker , Stuart G Siddell , Elliot J Lefkowitz , Arcady R Mushegian , Evelien M Adriaenssens , et al.
Archives of Virology, 2022, 167 (11), pp.2429-2440. ⟨10.1007/s00705-022-05516-5⟩
Journal articles pasteur-03816110v1

Changes to virus taxonomy and the Statutes ratified by the International Committee on Taxonomy of Viruses (2020)

Peter J Walker , Stuart G Siddell , Elliot J Lefkowitz , Arcady R Mushegian , Evelien M Adriaenssens , et al.
Archives of Virology, 2020, 165 (11), pp.2737-2748. ⟨10.1007/s00705-020-04752-x⟩
Journal articles pasteur-03112960v1
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification

Evelien M Adriaenssens , Simon Roux , J. Rodney Brister , Ilene Karsch-Mizrachi , Jens H Kuhn , et al.
Nature Biotechnology, 2023, 41 (7), pp.898-902. ⟨10.1038/s41587-023-01844-2⟩
Journal articles pasteur-04162634v1
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Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes

Wade Abbott , Orly Alber , Ed Bayer , Jean-Guy Berrin , Alisdair Boraston , et al.
Glycobiology, 2018, 28 (1), pp.3-8. ⟨10.1093/glycob/cwx089⟩
Journal articles hal-01886461v1
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Bacterial Viruses Subcommittee and Archaeal Viruses Subcommittee of the ICTV: update of taxonomy changes in 2021

Mart Krupovic , Dann Turner , Vera Morozova , Mike Dyall-Smith , Hanna M. Oksanen , et al.
Archives of Virology, 2021, 166 (11), pp.3239-3244. ⟨10.1007/s00705-021-05205-9⟩
Journal articles pasteur-03369444v1

Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks

Ho Bin Jang , Benjamin Bolduc , Olivier Zablocki , Jens H. Kuhn , Simon Roux , et al.
Nature Biotechnology, 2019, 37 (6), pp.632-639. ⟨10.1038/s41587-019-0100-8⟩
Journal articles pasteur-02557180v1
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Virus taxonomy and the role of the International Committee on Taxonomy of Viruses (ICTV)

Stuart G Siddell , Donald B Smith , Evelien Adriaenssens , Poliane Alfenas-Zerbini , Bas E Dutilh , et al.
Journal of General Virology, 2023, 104 (5), pp.001840. ⟨10.1099/jgv.0.001840⟩
Journal articles pasteur-04117907v1

Synergistic interaction between pH and NaCl in the limits of germination and outgrowth of Clostridium sporogenes and Group I Clostridium botulinum vegetative cells and spores after heat treatment

Emmanuelle Boix , Louis Coroller , Olivier Couvert , Stella Planchon , Arnoud H.M. van Vliet , et al.
Food Microbiology, 2022, 106, pp.104055. ⟨10.1016/j.fm.2022.104055⟩
Journal articles pasteur-03744966v1