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Genomic Epidemiology of 2015–2016 Zika Virus Outbreak in Cape Verde

Oumar Faye , Maria de Lourdes Monteiro , Bram Vrancken , Matthieu Prot , Sebastian Lequime , et al.
Emerging Infectious Diseases, 2020, 26 (6), pp.1084-1090. ⟨10.3201/eid2606.190928⟩
Journal articles pasteur-02862296v1
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Translation and codon usage regulate Argonaute slicer activity to trigger small RNA biogenesis

Meetali Singh , Eric Cornes , Blaise Li , Piergiuseppe Quarato , Loan Bourdon , et al.
Nature Communications, 2021, 12 (1), pp.3492. ⟨10.1038/s41467-021-23615-w⟩
Journal articles pasteur-03258520v1
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CD32+CD4+ T Cells Sharing B Cell Properties Increase With Simian Immunodeficiency Virus Replication in Lymphoid Tissues

Nicolas Huot , Philippe Rascle , Cyril Planchais , Vanessa Contreras , Caroline Passaes , et al.
Frontiers in Immunology, 2021, 12, pp.695148. ⟨10.3389/fimmu.2021.695148⟩
Journal articles pasteur-03278887v1
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In Situ Fixation Redefines Quiescence and Early Activation of Skeletal Muscle Stem Cells

Léo Machado , Joana Esteves de Lima , Odile Fabre , Caroline C. Proux , Rachel Legendre , et al.
Cell Reports, 2017, 21 (7), pp.1982-1993. ⟨10.1016/j.celrep.2017.10.080⟩
Journal articles pasteur-02562451v1
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Shigella promotes major alteration of gut epithelial physiology and tissue invasion by shutting off host intracellular transport

Mariana Ferrari , Valérie Malardé , Laura Salavessa , Giulia Nigro , Stéphane Descorps-Declère , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2019, ⟨10.1073/pnas.1902922116⟩
Journal articles pasteur-02167942v1
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Genome-wide CRISPR-dCas9 screens in E. coli identify essential genes and phage host factors

Francois Rousset , Lun Cui , Elise Siouve , Christophe Bécavin , Florence Depardieu , et al.
PLoS Genetics, 2018, 14 (11), pp.e1007749. ⟨10.1371/journal.pgen.1007749⟩
Journal articles pasteur-01975438v1
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Carryover effects of larval exposure to different environmental bacteria drive adult trait variation in a mosquito vector

Laura B Dickson , Davy Jiolle , Guillaume Minard , Isabelle Moltini-Conclois , Stevenn Volant , et al.
Science Advances , 2017, 3 (8), pp.e1700585. ⟨10.1126/sciadv.1700585⟩
Journal articles hal-01580399v1

Author Correction: The population structure of Clostridium tetani deduced from its pan-genome

Diana Chapetón-Montes , Lucile Plourde , Christiane Bouchier , Laurence Ma , Laure Diancourt , et al.
Scientific Reports, 2019, 9 (1), ⟨10.1038/s41598-019-53688-z⟩
Journal articles pasteur-02448687v1
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Interoperable medical data: The missing link for understanding COVID-19

Denis C Bauer , Alejandro Metke-Jimenez , Sebastian Maurer-Stroh , Suma Tiruvayipati , Laurence Wilson , et al.
Transboundary and emerging diseases, 2020, ⟨10.1111/tbed.13892⟩
Journal articles hal-03149610v1
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Viral Host Range database, an online tool for recording, analyzing and disseminating virus-host interactions

Quentin Lamy-Besnier , Bryan Brancotte , Hervé Ménager , Laurent Debarbieux
Bioinformatics, 2021, 60 (4), pp.921-925. ⟨10.1093/bioinformatics/btab070⟩
Journal articles pasteur-03166905v1
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Broad-Range Papillomavirus Transcriptome as a Biomarker of Papillomavirus-Associated Cervical High-Grade Cytology

Philippe Pérot , Anne Biton , Jacques Marchetta , Anne-Gaelle Pourcelot , André Nazac , et al.
Journal of Molecular Diagnostics, 2019, 21 (5), pp.768-781. ⟨10.1016/j.jmoldx.2019.04.010⟩
Journal articles pasteur-02613507v1
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Phylogenetic Analysis of HIV-1 Shows Frequent Cross-Country Transmission and Local Population Expansions

Marc Bennedbæk , Anna Zhukova , Man-Hung Eric Tang , Jaclyn Bennet , Paula Munderi , et al.
Virus Evolution, 2021, 7 (2), pp.veab055. ⟨10.1093/ve/veab055⟩
Journal articles pasteur-03266546v1
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SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data

Yoann Dufresne , Franck Lejzerowicz , Laure Apotheloz Perret-Gentil , Jan Pawlowski , Tristan Cordier
BMC Bioinformatics, 2019, 20 (1), pp.88. ⟨10.1186/s12859-019-2663-2⟩
Journal articles pasteur-03263390v1

Flavobacterium panici sp. nov. isolated from the rhizosphere of the switchgrass Panicum virgatum

Peter Kämpfer , S. Glaeser , John Mcinroy , Jia Xu , Hans-Jürgen Busse , et al.
International Journal of Systematic and Evolutionary Microbiology, 2020, 70 (11), pp.5824-5831. ⟨10.1099/ijsem.0.004482⟩
Journal articles pasteur-03259727v1
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MetaHiC phage-bacteria infection network reveals active cycling phages of the healthy human gut

Martial Marbouty , Agnès Thierry , Gael A. Millot , Romain Koszul
eLife, 2021, 10, pp.e60608. ⟨10.7554/eLife.60608⟩
Journal articles pasteur-03369735v1
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COVID-Align: Accurate online alignment of hCoV-19 genomes using a profile HMM

Frédéric Lemoine , Luc Blassel , Jakub Voznica , Olivier Gascuel
Bioinformatics, 2021, pp.btaa871. ⟨10.1093/bioinformatics/btaa871⟩
Journal articles pasteur-02995703v1

Xinfangfangia humi sp. nov., isolated from soil amended with humic acid

Peter Kämpfer , Hans-Jürgen Busse , John A. Mcinroy , Alexis Criscuolo , Dominique Clermont , et al.
International Journal of Systematic and Evolutionary Microbiology, 2019, 69 (7), pp.2070-2075. ⟨10.1099/ijsem.0.003434⟩
Journal articles pasteur-03259867v1
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Reducing neutrophil exposure to oxygen allows their basal state maintenance

Louise Injarabian , Jurate Skerniskyte , Quentin Giai Gianetto , Véronique Witko-Sarsat , Benoit Marteyn
Immunology and Cell Biology, 2021, 99 (7), pp.782-789. ⟨10.1111/imcb.12458⟩
Journal articles pasteur-03243457v1

Jeotgalicoccus meleagridis sp. nov. isolated from bioaerosol from emissions of a turkey fattening plant and reclassification of Jeotgalicoccus halophilus Liu et al. 2011 as a later heterotypic synonym of Jeotgalicoccus aerolatus Martin et al. 2011

Peter Kämpfer , Hans-Jürgen Busse , Stefanie P Glaeser , Dominique Clermont , Alexis Criscuolo , et al.
International Journal of Systematic and Evolutionary Microbiology, 2019, 71 (3), ⟨10.1099/ijsem.0.004745⟩
Journal articles pasteur-03253795v1
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Ongoing diphtheria outbreak in Yemen: a cross-sectional and genomic epidemiology study

Edgar Badell , Abdulilah Alharazi , Alexis Criscuolo , Khaled Abdullah Ali Almoayed , Noémie Lefrancq , et al.
The Lancet Microbe, 2021, ⟨10.1016/s2666-5247(21)00094-x⟩
Journal articles pasteur-03239537v1
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Correlation between RB1germline mutations and second primary malignancies in hereditary retinoblastoma patients treated with external beam radiotherapy

Amélie Chaussade , Gaël A Millot , Constance Wells , Hervé J Brisse , Marick Laé , et al.
European Journal of Medical Genetics, 2019, 62 (3), pp.217-223. ⟨10.1016/j.ejmg.2018.07.017⟩
Journal articles hal-02715581v1
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Statistical analysis of post-translational modifications quantified by label-free proteomics across multiple biological conditions with R: illustration from SARS-CoV-2 infected cells

Giai Gianetto Quentin
Statistical Analysis of Proteomic Data, 2023
Book sections pasteur-03243433v2
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Listeriolysin S: A bacteriocin from Listeria monocytogenes that induces membrane permeabilization in a contact-dependent manner

Jazmín Meza-Torres , Mickaël Lelek , Juan Quereda , Martin Sachse , Giulia Manina , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (40), pp.e2108155118. ⟨10.1073/pnas.2108155118⟩
Journal articles hal-03620714v1
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RNase E and HupB dynamics foster mycobacterial cell homeostasis and fitness

Anna Griego , Thibaut Douché , Quentin Giai Gianetto , Mariette Matondo , Giulia Manina
iScience, 2022, 25 (5), pp.104233. ⟨10.1016/j.isci.2022.104233⟩
Journal articles pasteur-03693876v1
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ZOLA-3D allows flexible 3D localization microscopy over an adjustable axial range

Andrey Aristov , Benoît Lelandais , Elena Rensen , Christophe Zimmer
Nature Communications, 2018, 9 (1), pp.2409. ⟨10.1038/s41467-018-04709-4⟩
Journal articles pasteur-02074371v1
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SARS-CoV-2 infection in schools in a northern French city: a retrospective serological cohort study in an area of high transmission, France, January to April 2020

Arnaud Fontanet , Laura Tondeur , Rebecca Grant , Sarah Temmam , Yoann Madec , et al.
Eurosurveillance, 2021, 26 (15), pp.2001695. ⟨10.2807/⟩
Journal articles pasteur-03236257v1
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Wide diversity of methane and short-chain alkane metabolisms in uncultured archaea

Guillaume Borrel , Panagiotis S Adam , Luke J Mckay , Lin-Xing Chen , Isabel Natalia Sierra-García , et al.
Nature Microbiology, 2019, ⟨10.1038/s41564-019-0363-3⟩
Journal articles pasteur-02059013v1

CotL, a new morphogenetic spore coat protein of Clostridium difficile

Carolina Alves Feliciano , Thibaut Douche , Quentin Giai Gianetto , Mariette I Matondo , Isabelle Martin-Verstraete , et al.
Environmental Microbiology, 2019, 21 (3), pp.984-1003. ⟨10.1111/1462-2920.14505⟩
Journal articles pasteur-02331056v1

Flavobacterium bizetiae sp. nov., isolated from diseased freshwater fish in Canada at the end of the 1970s

Estelle Mühle , Chloé Abry , Priscilla Leclerc , Gogoa-Marthe Goly , Alexis Criscuolo , et al.
International Journal of Systematic and Evolutionary Microbiology, 2021, 71 (1), pp.004576. ⟨10.1099/ijsem.0.004576⟩
Journal articles pasteur-03082360v1
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Flavobacterium salmonis sp. nov. isolated from Atlantic salmon (Salmo salar) and formal proposal to reclassify Flavobacterium spartansii as a later heterotypic synonym of Flavobacterium tructae

Peter Kämpfer , Rute Irgang , Stefanie P. Glaeser , Hans-Jürgen Busse , Alexis Criscuolo , et al.
International Journal of Systematic and Evolutionary Microbiology, 2020, ⟨10.1099/ijsem.0.004510⟩
Journal articles pasteur-02975458v1