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Structure: Internal structure identifier : 213159
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SMS: Smart Model Selection in PhyML

Vincent Lefort , Jean-Emmanuel Longueville , Olivier Gascuel
Molecular Biology and Evolution, 2017, 34 (9), pp.2422-2424. ⟨10.1093/molbev/msx149⟩
Journal articles lirmm-01794206v1
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Le dixième gène du VIH

Elodie Cassan , Anne-Muriel Arigon Chifolleau , Jean-Michel Mesnard , Antoine Gros , Olivier Gascuel
Médecine/Sciences, 2017, 33 (5), pp.484-485. ⟨10.1051/medsci/20173305008⟩
Journal articles lirmm-01800291v1
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Complete Genome and Phylogeny of Puumala Hantavirus Isolates Circulating in France

Guillaume Castel , Mathilde Couteaudier , Frank Sauvage , Jean-Baptiste Pons , Séverine Murri , et al.
Viruses, 2015, 7 (10), pp.5476-5488. ⟨10.3390/v7102884⟩
Journal articles hal-01221924v2
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Cuban history of CRF19 recombinant subtype of HIV-1

Anna Zhukova , Jakub Voznica , Miraine Davila Felipe , Thu-Hien To , Lissette Pérez , et al.
PLoS Pathogens, 2021, 17 (8), pp.e1009786. ⟨10.1371/journal.ppat.1009786⟩
Journal articles hal-03228076v1
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Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities

Sarah Cohen-Boulakia , Khalid Belhajjame , Olivier Collin , Jérôme Chopard , Christine Froidevaux , et al.
Future Generation Computer Systems, 2017, 75, pp.284-298. ⟨10.1016/j.future.2017.01.012⟩
Journal articles hal-01516082v1
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Concomitant emergence of the antisense protein gene of HIV-1 and of the pandemic

Elodie Cassan , Anne-Muriel Arigon Chifolleau , Jean-Michel Mesnard , Antoine Gross , Olivier Gascuel
Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (41), pp.11537-11542. ⟨10.1073/pnas.1605739113⟩
Journal articles lirmm-01397005v1
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Inferring epidemiological parameters from phylogenies using regression-ABC: a comparative study

Emma Saulnier , Olivier Gascuel , Samuel Alizon
PLoS Computational Biology, 2017, 13 (3), pp.e1005416. ⟨10.1371/journal.pcbi.1005416⟩
Journal articles hal-01567904v1
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Functional analysis of Plasmodium falciparum subpopulations associated with artemisinin resistance in Cambodia

Ankit Dwivedi , Christelle Reynes , Axel Kuehn , Daniel Barry Roche , Nimol Khim , et al.
Malaria Journal, 2017, 16 (1), pp.493. ⟨10.1186/s12936-017-2140-1⟩
Journal articles inserm-01672315v1
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Plasmodium falciparum parasite population structure and gene flow associated to anti-malarial drugs resistance in Cambodia

Ankit Dwivedi , Nimol Khim , Christelle Reynes , Patrice Ravel , Laurence Ma , et al.
Malaria Journal, 2016, 15, pp.319. ⟨10.1186/s12936-016-1370-y⟩
Journal articles hal-02295686v1
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Improving pairwise comparison of protein sequences with domain co-occurrence

Christophe Menichelli , Olivier Gascuel , Laurent Brehelin
PLoS Computational Biology, 2018, 14 (1), pp.e1005889. ⟨10.1371/journal.pcbi.1005889⟩
Journal articles lirmm-01744475v1
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Subtelomere organization in the genome of the microsporidian Encephalitozoon cuniculi: patterns of repeated sequences and physicochemical signatures

Ndongo Dia , Laurence Lavie , Ngor Faye , Guy Méténier , Edouard Yeramian , et al.
BMC Genomics, 2016, 17 (1), pp.34. ⟨10.1186/s12864-015-1920-7⟩
Journal articles hal-01983985v1
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The combinatorics of overlapping genes

Sophie Lèbre , Olivier Gascuel
Journal of Theoretical Biology, 2017, 415, pp.90-101. ⟨10.1016/j.jtbi.2016.09.018⟩
Journal articles hal-01822866v1
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Special Issue: Mathematical and Computational Evolutionary Biology-2015

David Bryant , Olivier Gascuel
Systematic Biology, 2017, 66 (1), pp.1 - 2. ⟨10.1093/sysbio/syw111⟩
Journal articles pasteur-02405199v1