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Structure: Internal structure identifier : 1090891
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Structural and molecular determinants for the interaction of ExbB from Serratia marcescens and HasB, a TonB paralog

Valérie Biou , Ricardo Jorge Diogo Adaixo , Mohamed Chami , Pierre-Damien Coureux , Benoist Laurent , et al.
Communications Biology, 2022, 5 (1), pp.355. ⟨10.1038/s42003-022-03306-y⟩
Journal articles hal-03662822v1
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Bacterial Membrane Vesicles as a Novel Strategy for Extrusion of Antimicrobial Bismuth Drug in Helicobacter pylori

Sumith Kumar , Christine Schmitt , Olivier Gorgette , Martial Marbouty , Magalie Duchateau , et al.
mBio, 2022, 13 (5), pp.e0163322. ⟨10.1128/mbio.01633-22⟩
Journal articles pasteur-04093078v1
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The RBPome of influenza A virus mRNA reveals a role for TDP-43 in viral replication

Maud Dupont , Tim Krischuns , Quentin Giai-Gianetto , Sylvain Paisant , Stefano Bonazza , et al.
Preprints, Working Papers, ... pasteur-04093384v1
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MSclassifR: an R package for supervised classification of mass spectra with machine learning methods

Alexandre Godmer , Yahia Benzerara , Nicolas Veziris , Mariette Matondo , Alexandra Aubry , et al.
Preprints, Working Papers, ... pasteur-04093599v1

Design and in vitro characterization of RXR variants as tools to investigate the biological role of endogenous rexinoids

Albane Le Maire , Martial Rey , Valérie Vivat , Laura Guée , Pauline Blanc , et al.
Journal of Molecular Endocrinology, 2022, 69 (3), pp.377-390. ⟨10.1530/JME-22-0021⟩
Journal articles hal-03787368v1

Expansion of nickel binding- and histidine-rich proteins during gastric adaptation of Helicobacter species

Frédéric Fischer , Egor Vorontsov , Evelyne Turlin , Christian Malosse , Camille Garcia , et al.
Metallomics, 2022, 14 (9), ⟨10.1093/mtomcs/mfac060⟩
Journal articles hal-03818858v1
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Queuosine modification of tRNA-Tyrosine elicits translational reprogramming and enhances growth of Vibrio cholerae with aminoglycosides

Louna Fruchard , Anamaria Babosan , Andre Carvalho , Manon Lang , Blaise Li , et al.
Preprints, Working Papers, ... pasteur-04093412v1
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Amphiregulin mediates non-cell-autonomous effect of senescence on reprogramming

Mathieu von Joest , Cheng Chen , Thibaut Douché , Jeremy Chantrel , Aurélie Chiche , et al.
Cell Reports, 2022, 40 (2), pp.111074. ⟨10.1016/j.celrep.2022.111074⟩
Journal articles pasteur-04093575v1
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Using ProteoCombiner to integrate bottom-up and top-down proteomics data to improve proteoform identification

Diogo Borges Lima , Mathieu Dupré , Magalie Duchateau , Quentin Giai Gianetto , Martial Jean-Pierre Rey , et al.
Preprints, Working Papers, ... pasteur-03243560v1
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De Novo Sequencing of Antibody Light Chain Proteoforms from Patients with Multiple Myeloma

Mathieu Dupré , Magalie Duchateau , Rebecca Sternke-Hoffmann , Amelie Boquoi , Christian Malosse , et al.
Analytical Chemistry, 2021, 93 (30), pp.10627-10634. ⟨10.1021/acs.analchem.1c01955⟩
Journal articles pasteur-03395532v1
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Pneumococcus triggers NFkB degradation in COMMD2 aggresome-like bodies

Michael G Connor , Lisa Sanchez , Christine Chevalier , Filipe Carvalho , Matthew G Eldridge , et al.
Preprints, Working Papers, ... pasteur-04097504v1

Leveraging the partition selection bias to achieve a high-quality clustering of mass spectra

André R.F. Silva , Diogo Lima , Louise Kurt , Mathieu Dupré , Julia Chamot-Rooke , et al.
Journal of Proteomics, 2021, 245, pp.104282. ⟨10.1016/j.jprot.2021.104282⟩
Journal articles pasteur-03441752v1
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Salmonella antibacterial Rhs polymorphic toxin inhibits translation through ADP-ribosylation of EF-Tu P-loop

Dukas Jurėnas , Martial Rey , Deborah Byrne , Julia Chamot-Rooke , Laurent Terradot , et al.
Nucleic Acids Research, 2022, Methods in Molecular Biology, 50 (22), pp.13114-13127. ⟨10.1093/nar/gkac1162⟩
Journal articles hal-04009485v1
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Comparing Top-Down Proteoform Identification: Deconvolution, PrSM Overlap, and PTM Detection

David Tabb , Kyowon Jeong , Karen Druart , Megan Gant , Kyle Brown , et al.
Journal of Proteome Research, 2023, In press. ⟨10.1021/acs.jproteome.2c00673⟩
Journal articles pasteur-04111608v1
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Single locus phosphoproteomics reveals phosphorylation of RPA-1 is required for generation of single-strand DNA following a break at a subtelomeric locus

Emilia Mclaughlin , Annick Dujeancourt-Henry , Thibault Chaze , Quentin Giai Gianetto , Mariette Matondo , et al.
Preprints, Working Papers, ... pasteur-04093539v1
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Interaction network among de novo purine nucleotide biosynthesis enzymes in Escherichia coli

Antoine Gedeon , Gouzel Karimova , Nour Ayoub , Julien Dairou , Quentin Giai Gianetto , et al.
FEBS Journal, 2023, ⟨10.1111/febs.16746⟩
Journal articles pasteur-04092979v1
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Rasputin/G3BP mediates o’nyong-nyong virus subversion of antiviral immunity in Anopheles coluzzii

Solène Cottis , Adrien Blisnick , Christian Mitri , Emma Brito-Fravallo , Mariette Matondo , et al.
Preprints, Working Papers, ... pasteur-04224327v1
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A multiparameter optimization in middle‐down analysis of monoclonal antibodies by LC–MS/MS

Jonathan Dhenin , Mathieu Dupré , Karen Druart , Alain Krick , Christine Mauriac , et al.
Journal of Mass Spectrometry, 2023, 58 (3), pp.e4909. ⟨10.1002/jms.4909⟩
Journal articles pasteur-04102833v1
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A time-resolved multi-omics atlas of Acanthamoeba castellanii encystment

Clément Bernard , Marie Locard-Paulet , Cyril Noël , Magalie Duchateau , Quentin Giai Gianetto , et al.
Nature Communications, 2022, 13 (1), pp.4104. ⟨10.1038/s41467-022-31832-0⟩
Journal articles hal-03728227v1
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TDFragMapper: a visualization tool for evaluating experimental parameters in top-down proteomics

Jonathan Dhenin , Diogo B Lima , Mathieu Dupré , Julia Chamot-Rooke
Bioinformatics, 2021, pp.btab784. ⟨10.1093/bioinformatics/btab784⟩
Journal articles pasteur-03441695v1
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Mtfp1 ablation enhances mitochondrial respiration and protects against hepatic steatosis

Cecilia Patitucci , Juan Diego Hernández-Camacho , Elodie Vimont , Thomas Cokelaer , Thibault Chaze , et al.
Preprints, Working Papers, ... pasteur-04093359v1

Purification of infection-associated macropinosomes by magnetic isolation for proteomic characterization

Virginie Stévenin , Quentin Giai Gianetto , Magalie Duchateau , Mariette I Matondo , Jost Enninga , et al.
Nature Protocols, 2021, 16 (11), pp.5220-5249. ⟨10.1038/s41596-021-00610-5⟩
Journal articles pasteur-03413242v1
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Experimental evolution links post-transcriptional regulation to Leishmania fitness gain

Laura Piel , K. Shanmugha Rajan , Giovanni Bussotti , Hugo Varet , Rachel Legendre , et al.
PLoS Pathogens, 2022, 18 (3), pp.e1010375. ⟨10.1371/journal.ppat.1010375⟩
Journal articles pasteur-03615912v1
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Hemisynthetic alkaloids derived from trilobine are antimalarials with sustained activity in multidrug-resistant Plasmodium falciparum

Flore Nardella , Irina Dobrescu , Haitham Hassan , Fabien Rodrigues , Sabine Thiberge , et al.
iScience, 2023, 26 (2), pp.105940. ⟨10.1016/j.isci.2023.105940⟩
Journal articles pasteur-04099097v1
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Machine learning to improve the interpretation of intercalating dye-based quantitative PCR results

A. Godmer , J. Bigot , Q. Giai Gianetto , Y. Benzerara , N. Veziris , et al.
Scientific Reports, 2022, 12 (1), pp.16445. ⟨10.1038/s41598-022-21010-z⟩
Journal articles pasteur-04093054v1
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Biological differences between FIM2 and FIM3 fimbriae of Bordetella pertussis: not just the serotype

Soraya Matczak , Valérie Bouchez , Pauline Leroux , Thibaut Douché , Nils Collinet , et al.
Microbes and Infection, 2023, pp.105152. ⟨10.1016/j.micinf.2023.105152⟩
Journal articles pasteur-04109470v1
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Mounting, structure and autocleavage of a type VI secretion-associated Rhs polymorphic toxin

Dukas Jurėnas , Leonardo Talachia Rosa , Martial Rey , Julia Chamot-Rooke , Rémi Fronzes , et al.
Nature Communications, 2021, 12 (1), ⟨10.1038/s41467-021-27388-0⟩
Journal articles hal-03465940v1
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In-Depth Characterization of the Clostridioides difficile Phosphoproteome to Identify Ser/Thr Kinase Substrates

Transito Garcia-Garcia , Thibaut Douché , Quentin Giai Gianetto , Sandrine Poncet , Nesrine El Omrani , et al.
Molecular and Cellular Proteomics, 2022, 21, ⟨10.1016/j.mcpro.2022.100428⟩
Journal articles pasteur-04093631v1
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Yersiniomics, a Multi-Omics Interactive Database for Yersinia Species

Pierre Lê-Bury , Karen Druart , Cyril Savin , Pierre Lechat , Guillem Mas Fiol , et al.
Microbiology Spectrum, 2023, 11 (2), ⟨10.1128/spectrum.03826-22⟩
Journal articles pasteur-04102830v1
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NAD kinase promotes Staphylococcus aureus pathogenesis by supporting production of virulence factors and protective enzymes

Clarisse Leseigneur , Laurent Boucontet , Magalie Duchateau , Javier Pizarro-Cerda , Mariette Matondo , et al.
eLife, 2022, 11, pp.e79941. ⟨10.7554/elife.79941⟩
Journal articles hal-03812608v1