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Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations.
Gergely J Szöllosi
,
Bastien Boussau
,
Sophie S Abby
,
Eric Tannier
,
Vincent Daubin
Proceedings of the National Academy of Sciences of the United States of America, 2012, 109 (43), pp.17513-17518. ⟨10.1073/pnas.1202997109⟩
Journal articles
hal-00740292v1
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Ubiquinone Biosynthesis over the Entire O2 Range: Characterization of a Conserved O2-Independent Pathway
Ludovic Pelosi
,
Chau-Duy-Tam Vo
,
Sophie Saphia Abby
,
Laurent Loiseau
,
Bérengère Rascalou
,
et al.
Journal articles
hal-02183791v1
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Lateral gene transfer as a support for the tree of life.
Sophie S Abby
,
Eric Tannier
,
Manolo Gouy
,
Vincent Daubin
Proceedings of the National Academy of Sciences of the United States of America, 2012, 109 (13), pp.4962-4967. ⟨10.1073/pnas.1116871109⟩
Journal articles
hal-00752055v1
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Investment in rapid growth shapes the evolutionary rates of essential proteins.
Sara Vieira-Silva
,
Marie Touchon
,
Sophie S Abby
,
Eduardo P C Rocha
Proceedings of the National Academy of Sciences of the United States of America, 2011, 108 (50), pp.20030-5. ⟨10.1073/pnas.1110972108⟩
Journal articles
pasteur-00655553v1
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Diversification of the type IV filament superfamily into machines for adhesion, protein secretion, DNA uptake, and motility
Rémi Denise
,
Sophie S. Abby
,
Eduardo P. C. Rocha
Journal articles
pasteur-02263349v1
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Bacteria in Ostreococcus tauri cultures – friends, foes or hitchhikers?
Sophie S Abby
,
Marie Touchon
,
Aurelien de Jode
,
Nigel Grimsley
,
Gwenael Piganeau
Journal articles
hal-01321228v1
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MacSyFinder: a program to mine genomes for molecular systems with an application to CRISPR-Cas systems.
Sophie S Abby
,
Bertrand Néron
,
Hervé Ménager
,
Marie Touchon
,
Eduardo P C Rocha
Journal articles
pasteur-01080418v1
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Identification of protein secretion systems in bacterial genomes
Sophie S. Abby
,
Jean Cury
,
Julien Guglielmini
,
Bertrand Néron
,
Marie Touchon
,
et al.
Journal articles
pasteur-01374967v1
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Identifying Conjugative Plasmids and Integrative Conjugative Elements with CONJscan
Jean Cury
,
Sophie S. Abby
,
Olivia Doppelt-Azeroual
,
Bertrand Néron
,
Eduardo P C Rocha
Book sections
pasteur-02867882v1
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The evolution of protein secretion systems by co-option and tinkering of cellular machineries
Rémi Denise
,
Sophie S. Abby
,
Eduardo Rocha
Journal articles
pasteur-02626815v1
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The Non-Flagellar Type III Secretion System Evolved from the Bacterial Flagellum and Diversified into Host-Cell Adapted Systems
Sophie S. Abby
,
Eduardo P. C. Rocha
Journal articles
pasteur-01374947v1
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Testing for independence between evolutionary processes
Abdelkader Behdenna
,
Joël Pothier
,
Sophie S. Abby
,
Guillaume Achaz
,
Amaury Lambert
Journal articles
hal-01490961v1
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Candidatus Nitrosocaldus cavascurensis, an Ammonia Oxidizing, Extremely Thermophilic Archaeon with a Highly Mobile Genome
Sophie S. Abby
,
Michael Melcher
,
Melina Kerou
,
Mart Krupovic
,
Michaela Stieglmeier
,
et al.
Journal articles
hal-01702026v1
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MacSyFinder v2: Improved modelling and search engine to identify molecular systems in genomes
Bertrand Néron
,
Rémi Denise
,
Charles Coluzzi
,
Marie Touchon
,
Eduardo P.C. Rocha
,
et al.
Journal articles
pasteur-04060331v2
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Identification of Protein Secretion Systems in Bacterial Genomes Using MacSyFinder.
Sophie S. Abby
,
Eduardo P C Rocha
Journal articles
hal-01677379v1
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