Search - Institut Pasteur Access content directly

Filter your results

45 Results
authIdHal_s : marie-touchon
Image document

CRISPRCasdb a successor of CRISPRdb containing CRISPR arrays and cas genes from complete genome sequences, and tools to download and query lists of repeats and spacers

Christine Pourcel , Marie Touchon , Nicolas Villeriot , Jean-Philippe Vernadet , David Couvin , et al.
Nucleic Acids Research, 2020, 48 (D1), pp.D535-D544. ⟨10.1093/nar/gkz915⟩
Journal articles hal-02990278v1
Image document

Investment in rapid growth shapes the evolutionary rates of essential proteins.

Sara Vieira-Silva , Marie Touchon , Sophie S Abby , Eduardo P C Rocha
Proceedings of the National Academy of Sciences of the United States of America, 2011, 108 (50), pp.20030-5. ⟨10.1073/pnas.1110972108⟩
Journal articles pasteur-00655553v1
Image document

Bacteria in Ostreococcus tauri cultures – friends, foes or hitchhikers?

Sophie S Abby , Marie Touchon , Aurelien de Jode , Nigel Grimsley , Gwenael Piganeau
Frontiers in Microbiology, 2014, 5, pp.505. ⟨10.3389/fmicb.2014.00505⟩
Journal articles hal-01321228v1
Image document

Selfish, promiscuous, and sometimes useful: how mobile genetic elements drive horizontal gene transfer in microbial populations

Matthieu Haudiquet , Jorge A Moura de Sousa , Marie Touchon , Eduardo P. C. Rocha
Philosophical Transactions of the Royal Society of London. B (1887–1895), 2022, 377 (1861), pp.20210234. ⟨10.1098/rstb.2021.0234⟩
Journal articles pasteur-03684761v2
Image document

Integrative and conjugative elements and their hosts: composition, distribution and organization

Jean Cury , Marie Touchon , Eduardo P. C. Rocha
Nucleic Acids Research, 2017, 45 (15), pp.8943 - 8956. ⟨10.1093/nar/gkx607⟩
Journal articles pasteur-04076019v1
Image document

MacSyFinder: a program to mine genomes for molecular systems with an application to CRISPR-Cas systems.

Sophie S Abby , Bertrand Néron , Hervé Ménager , Marie Touchon , Eduardo P C Rocha
PLoS ONE, 2013, 9 (10), pp.e110726. ⟨10.1371/journal.pone.0110726⟩
Journal articles pasteur-01080418v1

Genesis, effects and fates of repeats in prokaryotic genomes

Todd J. Treangen , Anne-Laure Abraham , Marie Touchon , Eduardo P.C Rocha
FEMS Microbiology Reviews, 2009, 33 (3), pp.539-571. ⟨10.1111/j.1574-6976.2009.00169.x⟩
Journal articles hal-02319386v1

Clonogrouping, a Rapid Multiplex PCR Method for Identification of Major Clones of Listeria monocytogenes

Viviane Chenal-Francisque , Mylène M Maury , Morgane Lavina , Marie Touchon , Alexandre Leclercq , et al.
Journal of Clinical Microbiology, 2015, 53 (10), pp.3355-3358. ⟨10.1128/JCM.00738-15⟩
Journal articles pasteur-02390981v1
Image document

Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths.

Marie Touchon , Claire Hoede , Olivier Tenaillon , Valérie Barbe , Simon Baeriswyl , et al.
PLoS Genetics, 2009, 5 (1), pp.e1000344. ⟨10.1371/journal.pgen.1000344⟩
Journal articles hal-00390293v1
Image document

Genomic epidemiology and global diversity of the emerging bacterial pathogen Elizabethkingia anophelis

Sebastien Breurec , Alexis Criscuolo , Laure Diancourt , Olaya Rendueles , Mathias Vandenbogaert , et al.
Scientific Reports, 2016, 6, pp.30379. ⟨10.1038/srep30379⟩
Journal articles hal-02613124v1
Image document

Embracing the enemy: the diversification of microbial gene repertoires by phage-mediated horizontal gene transfer

Marie Touchon , Jorge A Moura de Sousa , Eduardo P. C. Rocha
Current Opinion in Microbiology, 2017, 38, pp.66-73. ⟨10.1016/j.mib.2017.04.010⟩
Journal articles pasteur-03111100v1
Image document

Phylogenetic background and habitat drive the genetic diversification of Escherichia coli

Marie Touchon , Amandine Perrin , Jorge A Moura de Sousa , Belinda Vangchhia , Samantha Burn , et al.
PLoS Genetics, 2020, 16 (6), pp.e1008866. ⟨10.1371/journal.pgen.1008866⟩
Journal articles pasteur-02866790v2
Image document

Parallels between experimental and natural evolution of legume symbionts

Camille Clerissi , Marie Touchon , Delphine Capela , Mingxing Tang , Stéphane Cruveiller , et al.
Nature Communications, 2018, 9 (1), pp.2264. ⟨10.1038/s41467-018-04778-5⟩
Journal articles cea-01880286v1

Metabolic diversity of the emerging pathogenic lineages ofKlebsiella pneumoniae

Camille Blin , Virginie Passet , Marie Touchon , Eduardo P. C. Rocha , Sylvain Brisse
Environmental Microbiology, 2017, 19 (5), pp.1881 - 1898. ⟨10.1111/1462-2920.13689⟩
Journal articles pasteur-04076001v1
Image document

The genomic diversification of the whole Acinetobacter genus: origins, mechanisms, and consequences.

Marie Touchon , Jean Cury , Eun-Jeong Yoon , Lenka Krizova , Gustavo C Cerqueira , et al.
Genome Biology and Evolution, 2014, 6 (10), pp.2866-82. ⟨10.1093/gbe/evu225⟩
Journal articles pasteur-01132634v1
Image document

Systematic and quantitative view of the antiviral arsenal of prokaryotes

Florian Tesson , Alexandre Hervé , Ernest Mordret , Marie Touchon , Camille D’humières , et al.
Nature Communications, 2022, 13 (1), pp.2561. ⟨10.1038/s41467-022-30269-9⟩
Journal articles hal-03823827v2
Image document

Author Correction : Parallels between experimental and natural evolution of legume symbionts (vol 9, 2264, 2018)

Camille Clerissi , Marie Touchon , Delphine Capela , Mingxing Tang , Stéphane Cruveiller , et al.
Nature Communications, 2018, 9, ⟨10.1038/s41467-018-07205-x⟩
Journal articles hal-02617830v1

Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity

Mylène M Maury , Yu-Huan Tsai , Caroline Charlier , Marie Touchon , Viviane Chenal-Francisque , et al.
Nature Genetics, 2016, 48 (3), pp.308-313. ⟨10.1038/ng.3501⟩
Journal articles pasteur-02170775v1

Human gene organization driven by the coordination of replication and transcription.

Maxime Huvet , Samuel Nicolay , Marie Touchon , Benjamin Audit , Yves d'Aubenton-Carafa , et al.
Genome Research, 2007, 17, pp.1278-85. ⟨10.1101/gr.6533407⟩
Journal articles ensl-00198451v1
Image document

A widespread family of polymorphic toxins encoded by temperate phages

Anne Jamet , Marie Touchon , Bruno Goncalves , João André Carriço , Alain Charbit , et al.
BMC Biology, 2016, 15 (1), pp.75. ⟨10.1186/s12915-017-0415-1⟩
Journal articles inserm-01580852v1
Image document

The chromosomal accommodation and domestication of mobile genetic elements

Marie Touchon , Louis-Marie Bobay , Eduardo P C Rocha
Current Opinion in Microbiology, 2014, 22, pp.22-29. ⟨10.1016/j.mib.2014.09.010⟩
Journal articles pasteur-01122287v1
Image document

Causes and Consequences of Bacteriophage Diversification via Genetic Exchanges across Lifestyles and Bacterial Taxa

Jorge A Moura de Sousa , Eugen Pfeifer , Marie Touchon , Eduardo P. C. Rocha
Molecular Biology and Evolution, 2021, 38 (6), pp.2497-2512. ⟨10.1093/molbev/msab044⟩
Journal articles hal-03357362v1
Image document

When bacteria are phage playgrounds: interactions between viruses, cells and mobile genetic elements

Eugen Pfeifer , Jorge de Sousa , Marie Touchon , Eduardo Rocha
Preprints, Working Papers, ... hal-03824239v1
Image document

A simple, reproducible and cost- effective procedure to analyse gut phageome: from phage isolation to bioinformatic approach

Camille d'Humières , Marie Touchon , Sara Dion , Jean Cury , Amine Ghozlane , et al.
Scientific Reports, 2019, ⟨10.1038/s41598-019-47656-w⟩
Journal articles hal-02329655v1
Image document

Inhibition of NHEJ repair by type II-A CRISPR-Cas systems in bacteria

Aude Bernheim , Alicia Calvo-Villamañán , Clovis Basier , Lun Cui , Eduardo P C Rocha , et al.
Nature Communications, 2017, 8, pp.2094. ⟨10.1038/s41467-017-02350-1⟩
Journal articles pasteur-01967501v1
Image document

Genetic exchanges are more frequent in bacteria encoding capsules

Olaya Rendueles , Jorge a Moura de Sousa , Aude Bernheim , Marie Touchon , Eduardo P C Rocha
PLoS Genetics, 2018, 14 (12), pp.e1007862. ⟨10.1371/journal.pgen.1007862⟩
Journal articles pasteur-02012595v1

A Module Located at a Chromosomal Integration Hot Spot Is Responsible for the Multidrug Resistance of a Reference Strain from Escherichia coli Clonal Group A

Mathilde Lescat , Alexandra Calteau , Claire Hoede , Valérie Barbe , Marie Touchon , et al.
Antimicrobial Agents and Chemotherapy, 2009, 53 (6), pp.2283-2288. ⟨10.1128/AAC.00123-09⟩
Journal articles hal-03612468v1
Image document

Identification of protein secretion systems in bacterial genomes

Sophie S. Abby , Jean Cury , Julien Guglielmini , Bertrand Néron , Marie Touchon , et al.
Scientific Reports, 2016, 6, ⟨10.1038/srep23080⟩
Journal articles pasteur-01374967v1
Image document

Manipulating or Superseding Host Recombination Functions: A Dilemma That Shapes Phage Evolvability

Marie Bobay , Marie Touchon , Eduardo P. C. Rocha
PLoS Genetics, 2013, 9 (9), pp.e1003825. ⟨10.1371/journal.pgen.1003825.s010⟩
Journal articles pasteur-01374955v1
Image document

Genome diversification via genetic exchanges between temperate and virulent bacteriophages

Jorge A. Moura de Sousa , Eugen Pfeifer , Marie Touchon , Eduardo P. C. Rocha
Preprints, Working Papers, ... hal-02988810v1