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CRISPRCasdb a successor of CRISPRdb containing CRISPR arrays and cas genes from complete genome sequences, and tools to download and query lists of repeats and spacers
Christine Pourcel
,
Marie Touchon
,
Nicolas Villeriot
,
Jean-Philippe Vernadet
,
David Couvin
,
et al.
Journal articles
hal-02990278v1
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Investment in rapid growth shapes the evolutionary rates of essential proteins.
Sara Vieira-Silva
,
Marie Touchon
,
Sophie S Abby
,
Eduardo P C Rocha
Proceedings of the National Academy of Sciences of the United States of America, 2011, 108 (50), pp.20030-5. ⟨10.1073/pnas.1110972108⟩
Journal articles
pasteur-00655553v1
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Bacteria in Ostreococcus tauri cultures – friends, foes or hitchhikers?
Sophie S Abby
,
Marie Touchon
,
Aurelien de Jode
,
Nigel Grimsley
,
Gwenael Piganeau
Journal articles
hal-01321228v1
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Selfish, promiscuous, and sometimes useful: how mobile genetic elements drive horizontal gene transfer in microbial populations
Matthieu Haudiquet
,
Jorge A Moura de Sousa
,
Marie Touchon
,
Eduardo P. C. Rocha
Philosophical Transactions of the Royal Society of London. B (1887–1895), 2022, 377 (1861), pp.20210234. ⟨10.1098/rstb.2021.0234⟩
Journal articles
pasteur-03684761v2
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Integrative and conjugative elements and their hosts: composition, distribution and organization
Jean Cury
,
Marie Touchon
,
Eduardo P. C. Rocha
Journal articles
pasteur-04076019v1
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MacSyFinder: a program to mine genomes for molecular systems with an application to CRISPR-Cas systems.
Sophie S Abby
,
Bertrand Néron
,
Hervé Ménager
,
Marie Touchon
,
Eduardo P C Rocha
Journal articles
pasteur-01080418v1
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Genesis, effects and fates of repeats in prokaryotic genomes
Todd J. Treangen
,
Anne-Laure Abraham
,
Marie Touchon
,
Eduardo P.C Rocha
Journal articles
hal-02319386v1
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Clonogrouping, a Rapid Multiplex PCR Method for Identification of Major Clones of Listeria monocytogenes
Viviane Chenal-Francisque
,
Mylène M Maury
,
Morgane Lavina
,
Marie Touchon
,
Alexandre Leclercq
,
et al.
Journal articles
pasteur-02390981v1
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Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths.
Marie Touchon
,
Claire Hoede
,
Olivier Tenaillon
,
Valérie Barbe
,
Simon Baeriswyl
,
et al.
Journal articles
hal-00390293v1
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Genomic epidemiology and global diversity of the emerging bacterial pathogen Elizabethkingia anophelis
Sebastien Breurec
,
Alexis Criscuolo
,
Laure Diancourt
,
Olaya Rendueles
,
Mathias Vandenbogaert
,
et al.
Journal articles
hal-02613124v1
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Embracing the enemy: the diversification of microbial gene repertoires by phage-mediated horizontal gene transfer
Marie Touchon
,
Jorge A Moura de Sousa
,
Eduardo P. C. Rocha
Journal articles
pasteur-03111100v1
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Phylogenetic background and habitat drive the genetic diversification of Escherichia coli
Marie Touchon
,
Amandine Perrin
,
Jorge A Moura de Sousa
,
Belinda Vangchhia
,
Samantha Burn
,
et al.
Journal articles
pasteur-02866790v2
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Parallels between experimental and natural evolution of legume symbionts
Camille Clerissi
,
Marie Touchon
,
Delphine Capela
,
Mingxing Tang
,
Stéphane Cruveiller
,
et al.
Journal articles
cea-01880286v1
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Metabolic diversity of the emerging pathogenic lineages ofKlebsiella pneumoniae
Camille Blin
,
Virginie Passet
,
Marie Touchon
,
Eduardo P. C. Rocha
,
Sylvain Brisse
Journal articles
pasteur-04076001v1
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The genomic diversification of the whole Acinetobacter genus: origins, mechanisms, and consequences.
Marie Touchon
,
Jean Cury
,
Eun-Jeong Yoon
,
Lenka Krizova
,
Gustavo C Cerqueira
,
et al.
Journal articles
pasteur-01132634v1
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Systematic and quantitative view of the antiviral arsenal of prokaryotes
Florian Tesson
,
Alexandre Hervé
,
Ernest Mordret
,
Marie Touchon
,
Camille D’humières
,
et al.
Journal articles
hal-03823827v2
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Author Correction : Parallels between experimental and natural evolution of legume symbionts (vol 9, 2264, 2018)
Camille Clerissi
,
Marie Touchon
,
Delphine Capela
,
Mingxing Tang
,
Stéphane Cruveiller
,
et al.
Journal articles
hal-02617830v1
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Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity
Mylène M Maury
,
Yu-Huan Tsai
,
Caroline Charlier
,
Marie Touchon
,
Viviane Chenal-Francisque
,
et al.
Journal articles
pasteur-02170775v1
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Human gene organization driven by the coordination of replication and transcription.
Maxime Huvet
,
Samuel Nicolay
,
Marie Touchon
,
Benjamin Audit
,
Yves d'Aubenton-Carafa
,
et al.
Journal articles
ensl-00198451v1
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A widespread family of polymorphic toxins encoded by temperate phages
Anne Jamet
,
Marie Touchon
,
Bruno Goncalves
,
João André Carriço
,
Alain Charbit
,
et al.
Journal articles
inserm-01580852v1
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The chromosomal accommodation and domestication of mobile genetic elements
Marie Touchon
,
Louis-Marie Bobay
,
Eduardo P C Rocha
Journal articles
pasteur-01122287v1
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Causes and Consequences of Bacteriophage Diversification via Genetic Exchanges across Lifestyles and Bacterial Taxa
Jorge A Moura de Sousa
,
Eugen Pfeifer
,
Marie Touchon
,
Eduardo P. C. Rocha
Journal articles
hal-03357362v1
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When bacteria are phage playgrounds: interactions between viruses, cells and mobile genetic elements
Eugen Pfeifer
,
Jorge de Sousa
,
Marie Touchon
,
Eduardo Rocha
2022
Preprints, Working Papers, ...
hal-03824239v1
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A simple, reproducible and cost- effective procedure to analyse gut phageome: from phage isolation to bioinformatic approach
Camille d'Humières
,
Marie Touchon
,
Sara Dion
,
Jean Cury
,
Amine Ghozlane
,
et al.
Journal articles
hal-02329655v1
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Inhibition of NHEJ repair by type II-A CRISPR-Cas systems in bacteria
Aude Bernheim
,
Alicia Calvo-Villamañán
,
Clovis Basier
,
Lun Cui
,
Eduardo P C Rocha
,
et al.
Journal articles
pasteur-01967501v1
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Genetic exchanges are more frequent in bacteria encoding capsules
Olaya Rendueles
,
Jorge a Moura de Sousa
,
Aude Bernheim
,
Marie Touchon
,
Eduardo P C Rocha
Journal articles
pasteur-02012595v1
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A Module Located at a Chromosomal Integration Hot Spot Is Responsible for the Multidrug Resistance of a Reference Strain from Escherichia coli Clonal Group A
Mathilde Lescat
,
Alexandra Calteau
,
Claire Hoede
,
Valérie Barbe
,
Marie Touchon
,
et al.
Journal articles
hal-03612468v1
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Identification of protein secretion systems in bacterial genomes
Sophie S. Abby
,
Jean Cury
,
Julien Guglielmini
,
Bertrand Néron
,
Marie Touchon
,
et al.
Journal articles
pasteur-01374967v1
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Manipulating or Superseding Host Recombination Functions: A Dilemma That Shapes Phage Evolvability
Marie Bobay
,
Marie Touchon
,
Eduardo P. C. Rocha
Journal articles
pasteur-01374955v1
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Genome diversification via genetic exchanges between temperate and virulent bacteriophages
Jorge A. Moura de Sousa
,
Eugen Pfeifer
,
Marie Touchon
,
Eduardo P. C. Rocha
2020
Preprints, Working Papers, ...
hal-02988810v1
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