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authIdHal_s : jchamot

Leveraging the partition selection bias to achieve a high-quality clustering of mass spectra

André R.F. Silva , Diogo Lima , Louise Kurt , Mathieu Dupré , Julia Chamot-Rooke , et al.
Journal of Proteomics, 2021, 245, pp.104282. ⟨10.1016/j.jprot.2021.104282⟩
Journal articles pasteur-03441752v1
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Proteomic Analysis of Intact Flagella of Procyclic Trypanosoma brucei Cells Identifies Novel Flagellar Proteins with Unique Sub-localization and Dynamics

Ines Subota , Daria Julkowska , Laetitia Vincensini , Nele Reeg , Johanna Buisson , et al.
Molecular and Cellular Proteomics, 2014, 13 (7), pp.1769-1786. ⟨10.1074/mcp.M113.033357⟩
Journal articles pasteur-01301216v1
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Salmonella antibacterial Rhs polymorphic toxin inhibits translation through ADP-ribosylation of EF-Tu P-loop

Dukas Jurėnas , Martial Rey , Deborah Byrne , Julia Chamot-Rooke , Laurent Terradot , et al.
Nucleic Acids Research, 2022, Methods in Molecular Biology, 50 (22), pp.13114-13127. ⟨10.1093/nar/gkac1162⟩
Journal articles hal-04009485v1
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Comparing Top-Down Proteoform Identification: Deconvolution, PrSM Overlap, and PTM Detection

David Tabb , Kyowon Jeong , Karen Druart , Megan Gant , Kyle Brown , et al.
Journal of Proteome Research, 2023, In press. ⟨10.1021/acs.jproteome.2c00673⟩
Journal articles pasteur-04111608v1
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Best practices and benchmarks for intact protein analysis for top-down mass spectrometry

Daniel Donnelly , Catherine Rawlins , Caroline Dehart , Luca Fornelli , Luis Schachner , et al.
Nature Methods, 2019, 16 (7), pp.587-594. ⟨10.1038/s41592-019-0457-0⟩
Journal articles pasteur-02331018v1

Interlaboratory Study for Characterizing Monoclonal Antibodies by Top-Down and Middle-Down Mass Spectrometry

Kristina Srzentić , Luca Fornelli , Yury Tsybin , Joseph Loo , Henrique Seckler , et al.
Journal of The American Society for Mass Spectrometry, 2020, 31 (9), pp.1783-1802. ⟨10.1021/jasms.0c00036⟩
Journal articles pasteur-03070508v1
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A type IV pilus mediates DNA binding during natural transformation in Streptococcus pneumoniae.

Raphael Laurenceau , Gérard Péhau-Arnaudet , Sonia Baconnais , Joseph Gault , Christian Malosse , et al.
PLoS Pathogens, 2013, 9 (6), pp.e1003473. ⟨10.1371/journal.ppat.1003473⟩
Journal articles hal-02370135v1
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Conserved Streptococcus pneumoniae Spirosomes Suggest a Single Type of Transformation Pilus in Competence

Raphaël Laurenceau , Petya V. Krasteva , Amy Diallo , Sahra Ouarti , Magalie Duchateau , et al.
PLoS Pathogens, 2015, 11 (4), pp.e1004835. ⟨10.1371/journal.ppat.1004835⟩
Journal articles hal-03157387v1
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ProteoCombiner: integrating bottom-up with top-down proteomics data for improved proteoform assessment

Diogo Lima , Mathieu Dupré , Magalie Duchateau , Quentin Giai Gianetto , Martial Jean-Pierre Rey , et al.
Bioinformatics, 2020, pp.btaa958. ⟨10.1093/bioinformatics/btaa958⟩
Journal articles pasteur-03014113v1
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Structural basis for loading and inhibition of a bacterial T6 SS phospholipase effector by the VgrG spike

Nicolas Flaugnatti , Chiara Rapisarda , Martial Rey , Solène G Beauvois , Viet Anh Nguyen , et al.
EMBO Journal, 2020, 39 (11), pp.e104129. ⟨10.15252/embj.2019104129⟩
Journal articles hal-02915537v1
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Evolution of Helicobacter: Acquisition by Gastric Species of Two Histidine-Rich Proteins Essential for Colonization

Daniel Vinella , Frédéric Fischer , Egor Vorontsov , Julien Gallaud , Christian Malosse , et al.
PLoS Pathogens, 2015, 11 (12), pp.e1005312. ⟨10.1371/journal.ppat.1005312⟩
Journal articles hal-01258641v1
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Using ProteoCombiner to integrate bottom-up and top-down proteomics data to improve proteoform identification

Diogo Borges Lima , Mathieu Dupré , Magalie Duchateau , Quentin Giai Gianetto , Martial Jean-Pierre Rey , et al.
Preprints, Working Papers, ... pasteur-03243560v1
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De Novo Sequencing of Antibody Light Chain Proteoforms from Patients with Multiple Myeloma

Mathieu Dupré , Magalie Duchateau , Rebecca Sternke-Hoffmann , Amelie Boquoi , Christian Malosse , et al.
Analytical Chemistry, 2021, 93 (30), pp.10627-10634. ⟨10.1021/acs.analchem.1c01955⟩
Journal articles pasteur-03395532v1
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Biogenesis and structure of a type VI secretion baseplate

Yassine Cherrak , Chiara Rapisarda , Riccardo Pellarin , Guillaume Bouvier , Benjamin Bardiaux , et al.
Nature Microbiology, 2018, 3 (12), pp.1404-1416. ⟨10.1038/s41564-018-0260-1⟩
Journal articles hal-02342924v1

Bio-guided identification of proteins for the diagnosis of cysticercosis in swine

Priscilla Nativel , Anjanirina Rahantamalala , Sitraka Ramiandrisoa , Virginie Rasoamampianinaa , Magalie Duchateau , et al.
Veterinary Parasitology, 2016, 220, pp.23-27. ⟨10.1016/j.vetpar.2016.02.021⟩
Journal articles hal-03157375v1

The COPII complex and lysosomal VAMP7 determine intracellular Salmonella localization and growth

José Carlos Santos , Magalie I Duchateau , Jennifer Fredlund , Allon Weiner , Adeline Mallet , et al.
Cellular Microbiology, 2015, 17 (12), pp.1699 - 1720. ⟨10.1111/cmi.12475⟩
Journal articles pasteur-01899448v1

The combination of electron capture dissociation and fixed charge derivatization increases sequence coverage for o-glycosylated and o-phosphorylated peptides.

Julia Chamot-Rooke , Guillaume van Der Rest , Alexandre Dalleu , Sylvie Bay , Jérôme Lemoine
Journal of The American Society for Mass Spectrometry, 2007, 18 (8), pp.1405-13. ⟨10.1016/j.jasms.2007.04.008⟩
Journal articles istex pasteur-00166621v1

Characterization of homodimer interfaces with cross-linking mass spectrometry and isotopically labeled proteins

Diogo Lima , John Melchior , Jamie Morris , Valmir C Barbosa , Julia Chamot-Rooke , et al.
Nature Protocols, 2018, 13 (3), pp.431-458. ⟨10.1038/nprot.2017.113⟩
Journal articles pasteur-02331100v1

ProForma: A Standard Proteoform Notation

Richard Leduc , Veit Schwämmle , Michael Shortreed , Anthony Cesnik , Stefan Solntsev , et al.
Journal of Proteome Research, 2018, 17 (3), pp.1321-1325. ⟨10.1021/acs.jproteome.7b00851⟩
Journal articles pasteur-02331425v1

Design and in vitro characterization of RXR variants as tools to investigate the biological role of endogenous rexinoids

Albane Le Maire , Martial Rey , Valérie Vivat , Laura Guée , Pauline Blanc , et al.
Journal of Molecular Endocrinology, 2022, 69 (3), pp.377-390. ⟨10.1530/JME-22-0021⟩
Journal articles hal-03787368v1
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A step-by-step in crystallo guide to bond cleavage and 1,6-anhydro-sugar product synthesis by a peptidoglycan-degrading lytic transglycosylase

Allison H Williams , Richard Wheeler , Lesly Rateau , Christian Malosse , Julia Chamot-Rooke , et al.
Journal of Biological Chemistry, 2018, 293 (16), pp.6000-6010. ⟨10.1074/jbc.ra117.001095⟩
Journal articles pasteur-01950858v1
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Calmodulin fishing with a structurally disordered bait triggers CyaA catalysis

Darragh P. O'Brien , Dominique Durand , Alexis Voegele , Véronique Hourdel , Marilyne Davi , et al.
PLoS Biology, 2017, 15 (12), pp.e2004486. ⟨10.1371/journal.pbio.2004486⟩
Journal articles hal-02294928v1

Expansion of nickel binding- and histidine-rich proteins during gastric adaptation of Helicobacter species

Frédéric Fischer , Egor Vorontsov , Evelyne Turlin , Christian Malosse , Camille Garcia , et al.
Metallomics, 2022, 14 (9), ⟨10.1093/mtomcs/mfac060⟩
Journal articles hal-03818858v1
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Structural and molecular determinants for the interaction of ExbB from Serratia marcescens and HasB, a TonB paralog

Valérie Biou , Ricardo Jorge Diogo Adaixo , Mohamed Chami , Pierre-Damien Coureux , Benoist Laurent , et al.
Communications Biology, 2022, 5 (1), pp.355. ⟨10.1038/s42003-022-03306-y⟩
Journal articles hal-03662822v1
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O-Glycosylation of the N-terminal region of the serine-rich adhesin Srr1 of Streptococcus agalactiae explored by mass spectrometry.

Thibault Chaze , Alain Guillot , Benoît Valot , Olivier Langella , Julia Chamot-Rooke , et al.
Molecular and Cellular Proteomics, 2014, 13 (9), pp.2168-82. ⟨10.1074/mcp.M114.038075⟩
Journal articles hal-01204448v1
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Extensive flavivirus E trimer breathing accompanies stem zippering of the post‐fusion hairpin

Iris Medits , Marie‐christine Vaney , Alexander Rouvinski , Martial Jean-Pierre Rey , Julia Chamot‐rooke , et al.
EMBO Reports, 2020, 21 (8), ⟨10.15252/embr.202050069⟩
Journal articles hal-02990225v1
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Regulation of NF-κB by the p105-ABIN2-TPL2 complex and RelAp43 during rabies virus infection

Benoit Besson , Florian Sonthonnax , Magalie Duchateau , Youcef Ben Khalifa , Florence Larrous , et al.
PLoS Pathogens, 2017, 13 (10), pp.e1006697. ⟨10.1371/journal.ppat.1006697⟩
Journal articles pasteur-02573147v1

Calcium-dependent disorder-to-order transitions are central to the secretion and folding of the CyaA toxin of Bordetella pertussis, the causative agent of whooping cough

Darragh P. O'Brien , Ana Cristina Sotomayor Perez , Johanna Karst , Sara E. Cannella , Véronique Yvette Ntsogo Enguéné , et al.
Journal articles hal-02183106v1
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Pseudopilin residue E5 is essential for recruitment by the type 2 secretion system assembly platform.

Mangayarkarasi Nivaskumar , Javier Santos-Moreno , Christian Malosse , Nathalie Nadeau , Julia Chamot-Rooke , et al.
Molecular Microbiology, 2016, 101 (6), pp.924-941. ⟨10.1111/mmi.13432⟩
Journal articles pasteur-02282206v1
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Structural models of intrinsically disordered and calcium-bound folded states of a protein adapted for secretion

Darragh P. O’brien , Belen Hernandez , Dominique Durand , Véronique Hourdel , Ana-Cristina Sotomayor-Pérez , et al.
Scientific Reports, 2016, 5, ⟨10.1038/srep14223⟩
Journal articles pasteur-01406897v1