Multitrait GWAS to connect disease variants and biological mechanisms
Hanna Julienne
,
Vincent Laville
,
Zachary Mccaw
,
Zihuai He
,
Vincent Guillemot
,
et al.
Journal articles
pasteur-03526210v1
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Making Biomedical Research Software FAIR: Actionable Step-by-step Guidelines with a User-support Tool
Bhavesh Patel
,
Sanjay Soundarajan
,
Hervé Ménager
,
Zicheng Hu
Journal articles
hal-04206208v1
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Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities
Sarah Cohen-Boulakia
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Khalid Belhajjame
,
Olivier Collin
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Jérôme Chopard
,
Christine Froidevaux
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et al.
Journal articles
hal-01516082v1
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ELIXIR and Toxicology: a community in development
Marvin Martens
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Rob Stierum
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Emma Schymanski
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Chris Evelo
,
Reza Aalizadeh
,
et al.
Journal articles
pasteur-03680151v1
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Multitrait genetic-phenotype associations to connect disease variants and biological mechanisms
Hanna Julienne
,
Vincent Laville
,
Zachary Mccaw
,
Zihuai He
,
Vincent Guillemot
,
et al.
2021
Preprints, Working Papers, ...
pasteur-03279159v1
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Nine Best Practices for Research Software Registries and Repositories: A Concise Guide
Task Force On Best Practices For Software Registries
,
Alain Monteil
,
Alejandra Gonzalez-Beltran
,
Alexandros Ioannidis
,
Alice Allen
,
et al.
2021
Preprints, Working Papers, ...
hal-03093837v1
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JASS: command line and web interface for the joint analysis of GWAS results
Hanna Julienne
,
Pierre Lechat
,
Vincent Guillemot
,
Carla Lasry
,
Chunzi Yao
,
et al.
Journal articles
pasteur-02635247v1
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ReGaTE: Registration of Galaxy Tools in Elixir
Olivia Doppelt-Azeroual
,
Fabien Mareuil
,
Eric Deveaud
,
Matúš Kalaš
,
Nicola Soranzo
,
et al.
Journal articles
pasteur-02613125v1
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Viral Host Range database, an online tool for recording, analyzing and disseminating virus-host interactions
Quentin Lamy-Besnier
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Bryan Brancotte
,
Hervé Ménager
,
Laurent Debarbieux
Journal articles
pasteur-03166905v1
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Community curation of bioinformatics software and data resources
Jon Ison
,
Hervé Ménager
,
Bryan Brancotte
,
Erik Jaaniso
,
Ahto Salumets
,
et al.
Journal articles
pasteur-02770716v1
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BioWorkFlow: Web Services toolkit and workflow applications evaluation to deploy a confidence network
Marc Wessner
,
Martin Senger
,
Franck Samson
,
Philippe Picouet
,
François Moreews
,
et al.
Jobim (Journées Ouvertes Biologie Informatique Mathématiques) , Jun 2008, Lille, France
Conference papers
inria-00327528v1
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Bioinformatics applications discovery and composition with the Mobyle suite and MobyleNet
Hervé Ménager
,
Vivek Gopalan
,
Bertrand Néron
,
Sandrine Larroudé
,
Julien Maupetit
,
et al.
Book sections
pasteur-03682347v1
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Bioimage analysis workflows: community resources to navigate through a complex ecosystem
Perrine Paul-Gilloteaux
,
Sébastien Tosi
,
Jean-Karim Hériché
,
Alban Gaignard
,
Hervé Ménager
,
et al.
Journal articles
hal-03208600v1
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The iPPI-DB initiative: a community-centered database of protein–protein interaction modulators
Rachel Torchet
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Karen Druart
,
Luis Checa Ruano
,
Alexandra Moine-Franel
,
Hélène Borges
,
et al.
Journal articles
hal-03252561v1
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The bio.tools registry of software tools and data resources for the life sciences
Jon Ison
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Hans Ienasescu
,
Piotr Chmura
,
Emil Rydza
,
Hervé Ménager
,
et al.
Journal articles
hal-02408472v1
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MacSyFinder: a program to mine genomes for molecular systems with an application to CRISPR-Cas systems.
Sophie S Abby
,
Bertrand Néron
,
Hervé Ménager
,
Marie Touchon
,
Eduardo P C Rocha
Journal articles
pasteur-01080418v1
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Redesign of iPPI-DB, a database for modulators of Protein-Protein Interactions
Rachel Torchet
,
Alexandra Moine-Franel
,
Hélène Borges
,
Bryan Brancotte
,
Olivia Doppelt-Azeroual
,
et al.
JOBIM (Journées Ouvertes Biologie, Informatique et Mathématiques) , Société Française de BioInformatique; GdR Bioinformatique Moléculaire; Institut Francais de Bioinformatique, Jul 2019, Nantes, France
Conference papers
pasteur-02867265v1
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Perspectives on automated composition of workflows in the life sciences
Anna-Lena Lamprecht
,
Magnus Palmblad
,
Jon Ison
,
Veit Schwämmle
,
Mohammad Sadnan Al Manir
,
et al.
Journal articles
pasteur-03680115v1
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Recommendations for the packaging and containerizing of bioinformatics software
Bjorn Gruening
,
Olivier Sallou
,
Pablo Moreno
,
Felipe da Veiga Leprevost
,
Hervé Ménager
,
et al.
Journal articles
pasteur-02769991v1
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Mobyle: a new full web bioinformatics framework
Bertrand Néron
,
Hervé Ménager
,
Corinne Maufrais
,
Nicolas Joly
,
Julien Maupetit
,
et al.
Journal articles
hal-01287963v1
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HARIBOSS: a curated database of RNA-small molecules structures to aid rational drug design
F. P. Panei
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R. Torchet
,
H. Menager
,
P. Gkeka
,
M. Bonomi
Journal articles
hal-03834209v2
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EDAM Browser: visualization of EDAM and annotated bioinformatics resources
Hager Eldakroury
,
Sakshi Dhamija
,
Rashika Rathi
,
Drashti Patoliya
,
Guneet Singh
,
et al.
BOSC , Jul 2021, Online, France
Conference poster
hal-04122666v1
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biotoolsSchema: a formalized schema for bioinformatics software description
Jon Ison
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Hans Ienasescu
,
Emil Rydza
,
Piotr Chmura
,
Kristoffer Rapacki
,
et al.
Journal articles
hal-03145289v1
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A reusable tree-based web-visualization to browse EDAM ontology, and contribute to it.
Bryan Brancotte
,
Christophe Blanchet
,
Hervé Ménager
Journal articles
pasteur-02770161v1
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The Flemmingsome reveals an ESCRT-to-membrane coupling via ALIX/syntenin/syndecan-4 required for completion of cytokinesis
Cyril Addi
,
Adrien Presle
,
Stéphane Frémont
,
Frédérique Cuvelier
,
Murielle Rocancourt
,
et al.
Journal articles
pasteur-02557366v1
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BioShaDock: a community driven bioinformatics shared Docker-based tools registry
François Moreews
,
Olivier Sallou
,
Hervé Ménager
,
Yvan Le Bras
,
Cyril Monjeaud
,
et al.
Journal articles
hal-01243520v1
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ARIAweb: a server for automated NMR structure calculation
Fabrice Allain
,
Fabien Mareuil
,
Hervé Ménager
,
Michael Nilges
,
Benjamin Bardiaux
Journal articles
pasteur-02569631v1
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On-target activity predictions enable improved CRISPR-dCas9 screens in bacteria
Alicia Calvo-Villamañán
,
Jérôme Wong Ng
,
Rémi Planel
,
Hervé Ménager
,
Arthur Chen
,
et al.
Journal articles
pasteur-02773823v1
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Methods Included: Standardizing Computational Reuse and Portability with the Common Workflow Language
Michael R. Crusoe
,
Sanne Abeln
,
Alexandru Iosup
,
Peter Amstutz
,
John Chilton
,
et al.
Journal articles
pasteur-03680143v2
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EDAM, the life-science ontology for data analysis and management
Lucie Lamothe
,
Alban Gaignard
,
Mads Kierkegaard
,
Hager Eldakroury
,
Melissa Black
,
et al.
Conference poster
hal-03702557v1
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