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Genomic epidemiology of Shigella in the United Kingdom shows transmission of pathogen sublineages and determinants of antimicrobial resistance

Kate S Baker , Timothy Dallman , Nigel Field , Tristan Childs , Holly Mitchell , et al.
Scientific Reports, 2018, 8 (1), pp.7389. ⟨10.1038/s41598-018-25764-3⟩
Journal articles pasteur-02006006v1

Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events

Vanessa Wong , Stephen Baker , Derek Pickard , Julian Parkhill , Andrew Page , et al.
Nature Genetics, 2015, 47 (6), pp.632-639. ⟨10.1038/ng.3281⟩
Journal articles pasteur-02043698v1
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Draft genomes of Shigella strains used by the STOPENTERICS consortium.

Omar Rossi , Kate S Baker , Armelle Phalipon , François-Xavier Weill , Francesco Citiulo , et al.
Gut Pathogens, 2015, 7, pp.14. ⟨10.1186/s13099-015-0061-5⟩
Journal articles pasteur-01178975v1
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The speciation and hybridization history of the genus Salmonella

Alexis Criscuolo , Sylvie Issenhuth-Jeanjean , Xavier Didelot , Kaisa Thorell , James Hale , et al.
Microbial Genomics, 2019, 5 (8), ⟨10.1099/mgen.0.000284⟩
Journal articles pasteur-02481833v1

Genomic history of the seventh pandemic of cholera in Africa

François-Xavier Weill , Daryl Domman , Elisabeth Njamkepo , Cheryl Tarr , Jean Rauzier , et al.
Science, 2017, 358 (6364), pp.785-789. ⟨10.1126/science.aad5901⟩
Journal articles pasteur-02045755v1
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Horizontal antimicrobial resistance transfer drives epidemics of multiple Shigella species

Kate S Baker , Timothy Dallman , Nigel Field , Tristan Childs , Holly Mitchell , et al.
Nature Communications, 2018, 9 (1), pp.1462. ⟨10.1038/s41467-018-03949-8⟩
Journal articles pasteur-02005961v1
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Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study

Kate Baker , Timothy Dallman , Philip Ashton , Martin Day , Gwenda Hughes , et al.
The Lancet Infectious Diseases, 2015, 15 (8), pp.913-921. ⟨10.1016/S1473-3099(15)00002-X⟩
Journal articles pasteur-02042957v1
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Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei

Hao Chung The , Christine Boinett , Duy Pham Thanh , Claire R Jenkins , François-Xavier Weill , et al.
Nature Communications, 2019, 10 (1), pp.4828. ⟨10.1038/s41467-019-12823-0⟩
Journal articles pasteur-02481816v1

Integrated view of Vibrio cholerae in the Americas

Daryl Domman , Marie-Laure Quilici , Matthew Dorman , Elisabeth Njamkepo , Ankur Mutreja , et al.
Science, 2017, 358 (6364), pp.789-793. ⟨10.1126/science.aao2136⟩
Journal articles pasteur-02046343v1