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Bioimage analysis workflows: community resources to navigate through a complex ecosystem

Perrine Paul-Gilloteaux , Sébastien Tosi , Jean-Karim Hériché , Alban Gaignard , Hervé Ménager , et al.
F1000Research, 2021, 10, pp.320. ⟨10.12688/f1000research.52569.1⟩
Journal articles hal-03208600v1
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The registry of software tools and data resources for the life sciences

Jon Ison , Hans Ienasescu , Piotr Chmura , Emil Rydza , Hervé Ménager , et al.
Genome Biology, 2019, 20 (164), pp.1-4. ⟨10.1186/s13059-019-1772-6⟩
Journal articles hal-02408472v1
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BioSimulators: a central registry of simulation engines and services for recommending specific tools

Bilal Shaikh , Lucian Smith , Dan Vasilescu , Gnaneswara Marupilla , Michael Wilson , et al.
Nucleic Acids Research, 2022, pp.1-7. ⟨10.1093/nar/gkac331⟩
Journal articles hal-03666382v1
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ReGaTE: Registration of Galaxy Tools in Elixir

Olivia Doppelt-Azeroual , Fabien Mareuil , Eric Deveaud , Matúš Kalaš , Nicola Soranzo , et al.
GigaScience, 2017, 6 (6), pp.1-4. ⟨10.1093/gigascience/gix022⟩
Journal articles pasteur-02613125v1
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Community curation of bioinformatics software and data resources

Jon Ison , Hervé Ménager , Bryan Brancotte , Erik Jaaniso , Ahto Salumets , et al.
Briefings in Bioinformatics, 2019, pp.bbz075. ⟨10.1093/bib/bbz075⟩
Journal articles pasteur-02770716v1
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Perspectives on automated composition of workflows in the life sciences

Anna-Lena Lamprecht , Magnus Palmblad , Jon Ison , Veit Schwämmle , Mohammad Sadnan Al Manir , et al.
F1000Research, 2021, 10, pp.897. ⟨10.12688/f1000research.54159.1⟩
Journal articles pasteur-03680115v1
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EDAM Browser: visualization of EDAM and annotated bioinformatics resources

Hager Eldakroury , Sakshi Dhamija , Rashika Rathi , Drashti Patoliya , Guneet Singh , et al.
BOSC, Jul 2021, Online, France
Conference poster hal-04122666v1
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biotoolsSchema: a formalized schema for bioinformatics software description

Jon Ison , Hans Ienasescu , Emil Rydza , Piotr Chmura , Kristoffer Rapacki , et al.
GigaScience, 2021, 10 (1), pp.giaa157. ⟨10.1093/gigascience/giaa157⟩
Journal articles hal-03145289v1
Image document

EDAM, the life-science ontology for data analysis and management

Lucie Lamothe , Alban Gaignard , Mads Kierkegaard , Hager Eldakroury , Melissa Black , et al.
JOBIM, Jul 2022, Rennes, France. ⟨10.5281/zenodo.6769072⟩
Conference poster hal-03702557v1