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Origin, evolution and global spread of SARS-CoV-2

Anna Zhukova , Luc Blassel , Frédéric Lemoine , Marie Morel , Jakub Voznica , et al.
Comptes Rendus Biologies, 2021, pp.1-19. ⟨10.5802/crbiol.29⟩
Journal articles pasteur-03038752v1
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COVID-Align: Accurate online alignment of hCoV-19 genomes using a profile HMM

Frédéric Lemoine , Luc Blassel , Jakub Voznica , Olivier Gascuel
Bioinformatics, 2021, pp.btaa871. ⟨10.1093/bioinformatics/btaa871⟩
Journal articles pasteur-02995703v1
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From sequences to knowledge, improving and learning from sequence alignments

Luc Blassel
Quantitative Methods [q-bio.QM]. Sorbonne Université, 2022. English. ⟨NNT : 2022SORUS385⟩
Theses tel-04041483v1
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Mapping-friendly sequence reductions: Going beyond homopolymer compression

Luc Blassel , Paul Medvedev , Rayan Chikhi
iScience, 2022, 25 (11), pp.105305. ⟨10.1016/j.isci.2022.105305⟩
Journal articles hal-04149122v1
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Drug resistance mutations in HIV: new bioinformatics approaches and challenges

Luc Blassel , Anna Zhukova , Christian J Villabona-Arenas , Katherine E Atkins , Stéphane Hué , et al.
Current Opinion in Virology, 2021, 51, pp.56 - 64. ⟨10.1016/j.coviro.2021.09.009⟩
Journal articles hal-03369954v1
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Using machine learning and big data to explore the drug resistance landscape in HIV

Luc Blassel , Anna Tostevin , Christian Julian Villabona-Arenas , Martine Peeters , Stéphane Hué , et al.
PLoS Computational Biology, 2021, 17 (8), pp.e1008873. ⟨10.1371/journal.pcbi.1008873⟩
Journal articles hal-03347486v1