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Quantitative Structural Interpretation of Protein Crosslinks
Isaac Filella-Merce
,
Benjamin Bardiaux
,
Michael Nilges
,
Guillaume Bouvier
Journal articles
pasteur-02369173v1
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quicksom: Self-Organizing Maps on GPUs for clustering of molecular dynamics trajectories
Vincent Mallet
,
Michael Nilges
,
Guillaume Bouvier
Journal articles
hal-03122153v1
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Normal mode analysis suggests a quaternary twist model for the nicotinic receptor gating mechanism.
Antoine Taly
,
Marc Delarue
,
Thomas Grutter
,
Michael Nilges
,
Nicolas Le Novere
,
et al.
Journal articles
pasteur-00162514v1
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Tuning interval Branch-and-Prune for protein structure determination
Bradley Worley
,
Florent Delhommel
,
Florence Cordier
,
Thérèse Malliavin
,
Benjamin Bardiaux
,
et al.
Journal articles
pasteur-01921275v2
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Nicotine reverses hypofrontality in animal models of addiction and schizophrenia.
Fani Koukouli
,
Marie Rooy
,
Dimitrios Tziotis
,
Kurt A Sailor
,
Heidi C O'Neill
,
et al.
Journal articles
pasteur-01452384v1
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Structural biology by NMR: structure, dynamics, and interactions.
Phineus R L Markwick
,
Thérèse Malliavin
,
Michael Nilges
Journal articles
pasteur-01570032v1
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In Silico screening on the three-dimensional model of the Plasmodium vivax SUB1 protease leads to the validation of a novel anti-parasite compound.
Anthony Bouillon
,
David Giganti
,
Christophe Benedet
,
Olivier Gorgette
,
Stéphane Pêtres
,
et al.
Journal articles
pasteur-01457905v1
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Allosteric Communication within the Cytoplasmic Region of the Histidine Kinase CpxA, Revealed by Molecular Dynamics Simulations of the Wild-Type and M228V Proteins
Marlet Martinez
,
Nathalie Duclert
,
Jean-Michel Betton
,
Pedro M. Alzari
,
Michael Nilges
,
et al.
Journal articles
pasteur-01300941v1
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Shelling the Voronoi interface of protein-protein complexes reveals patterns of residue conservation, dynamics and composition
Benjamin Bouvier
,
Raik Grünberg
,
Michael Nilges
,
Frédéric Cazals
Journal articles
hal-00796032v1
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Discrimination of agonists versus antagonists of nicotinic ligands based on docking onto AChBP structures.
Antoine Taly
,
Claire Colas
,
Thérèse Malliavin
,
Arnaud Blondel
,
Michael Nilges
,
et al.
Journal articles
pasteur-01459822v1
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An automatic tool to analyze and cluster macromolecular conformations based on self-organizing maps.
Guillaume Bouvier
,
Nathan Desdouits
,
Mathias Ferber
,
Arnaud Blondel
,
Michael Nilges
Journal articles
pasteur-01145388v1
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Identification of novel leishmanicidal molecules by virtual and biochemical screenings targeting Leishmania eukaryotic translation initiation factor 4A
Emna Harigua-Souiai
,
Yosser Zina Abdelkrim
,
Imen Bassoumi-Jamoussi
,
Ons Zakraoui
,
Guillaume Bouvier
,
et al.
Journal articles
pasteur-01968424v1
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Building Graphs To Describe Dynamics, Kinetics, and Energetics in the d -ALa: d -Lac Ligase VanA
Nathalie Duclert-Savatier
,
Guillaume Bouvier
,
Michael Nilges
,
Thérèse Malliavin
Journal articles
hal-01907205v1
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Structural insights into serine-rich fimbriae from Gram-positive bacteria.
Stéphanie Ramboarina
,
James A Garnett
,
Meixian Zhou
,
Yuebin Li
,
Zhixiang Peng
,
et al.
Journal articles
pasteur-01500608v1
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Host-Pathogen Adhesion as the Basis of Innovative Diagnostics for Emerging Pathogens
Alex van Belkum
,
Carina Almeida
,
Benjamin Bardiaux
,
Sarah V Barrass
,
Sarah J Butcher
,
et al.
Journal articles
hal-03331223v1
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NMR Exchange Format: a unified and open standard for representation of NMR restraint data
Aleksandras Gutmanas
,
Paul D Adams
,
Benjamin Bardiaux
,
Helen M. Berman
,
David Case
,
et al.
Journal articles
hal-01187684v1
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SAXS Merge : an automated statistical method to merge SAXS profiles using Gaussian processes
Yannick G. Spill
,
Seung Joong Kim
,
Dina Schneidman-Duhovny
,
Daniel Russel
,
Ben Webb
,
et al.
Journal articles
pasteur-01402996v1
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Accurate NMR structures through minimization of an extended hybrid energy.
Michael Nilges
,
Aymeric Bernard
,
Benjamin Bardiaux
,
Thérèse Malliavin
,
Michael Habeck
,
et al.
Journal articles
pasteur-01570038v1
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Structural and functional studies of titin’s fn3 modules reveal conserved surface patterns and binding to myosin S1 - a possible role in the frank-starling mechanism of the heart
Claudia Muhle-Goll
,
Michael Habeck
,
Olivier Cazorla
,
Michael Nilges
,
Siegfried Labeit
,
et al.
Journal articles
istex
hal-01824394v1
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Computational and biochemical analysis of type IV pilus dynamics and stability
Yasaman Karami
,
Aracelys López-Castilla
,
Andrea Ori
,
Jenny-Lee Thomassin
,
Benjamin Bardiaux
,
et al.
Journal articles
pasteur-03380000v2
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1H, 15 N and 13C resonance assignments of the C-terminal domain of PulL, a component of the Klebsiella oxytoca type II secretion system
Régine Dazzoni
,
Aracelys López-Castilla
,
Florence Cordier
,
Benjamin Bardiaux
,
Michael Nilges
,
et al.
Journal articles
hal-03331217v1
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Recommendations of the wwPDB NMR validation task force
T. Montelione Gaetano
,
Michael Nilges
,
Ad Bax
,
Peter Güntert
,
Torsten Herrmann
,
et al.
Journal articles
hal-00955839v1
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The iPPI-DB initiative: a community-centered database of protein–protein interaction modulators
Rachel Torchet
,
Karen Druart
,
Luis Checa Ruano
,
Alexandra Moine-Franel
,
Hélène Borges
,
et al.
Journal articles
hal-03252561v1
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Conformational sampling of CpxA: Connecting HAMP motions to the histidine kinase function
Nathalie Duclert-Savatier
,
Guillaume Bouvier
,
Michael Nilges
,
Thérèse Malliavin
Journal articles
pasteur-02330083v1
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ModBase, a database of annotated comparative protein structure models and associated resources
Ursula Pieper
,
Benjamin M. Webb
,
Guang Qiang Dong
,
Dina Schneidman-Duhovny
,
Hao Fan
,
et al.
Journal articles
pasteur-01414232v1
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Building Protein Atomic Models from Cryo-EM Density Maps and Residue Co-Evolution
Guillaume Bouvier
,
Benjamin Bardiaux
,
Riccardo Pellarin
,
Chiara Rapisarda
,
Michael Nilges
Journal articles
pasteur-03840876v1
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InDeep: 3D fully convolutional neural networks to assist in silico drug design on protein–protein interactions
Vincent Mallet
,
Luis Checa Ruano
,
Alexandra Moine Franel
,
Michael Nilges
,
Karen Druart
,
et al.
Journal articles
pasteur-04102799v1
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Computational Design of Protein-Based Inhibitors of Plasmodium vivax Subtilisin-Like 1 Protease
Giacomo Bastianelli
,
Anthony Bouillon
,
Christophe Nguyen
,
Dung Le-Nguyen
,
Michael Nilges
,
et al.
Journal articles
pasteur-01414431v1
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A role for specific collagen motifs during wound healing and inflammatory response of fibroblasts in the teleost fish gilthead seabream.
Patricia Castillo-Briceño
,
Dominique Bihan
,
Michael Nilges
,
Samir Hamaia
,
José Meseguer
,
et al.
Journal articles
pasteur-01459869v1
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Graphical analysis of NMR structural quality and interactive contact map of NOE assignments in ARIA.
Benjamin Bardiaux
,
Aymeric Bernard
,
Wolfgang Rieping
,
Michael Habeck
,
Thérèse E Malliavin
,
et al.
Journal articles
pasteur-01570029v1
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