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instaGRAAL: chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder
Lyam Baudry
,
Nadège Guiglielmoni
,
Hervé Marie-Nelly
,
Alexandre Cormier
,
Martial Marbouty
,
et al.
Journal articles
pasteur-02873422v1
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Chromosomal assembly of the flat oyster ( Ostrea edulis L.) genome as a new genetic resource for aquaculture
Isabelle Boutet
,
Homère Alves Monteiro
,
Lyam Baudry
,
Takeshi Takeuchi
,
Eric Bonnivard
,
et al.
Journal articles
hal-03896508v1
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Filling annotation gaps in yeast genomes using genome-wide contact maps.
Hervé Marie-Nelly
,
Martial Marbouty
,
Axel Cournac
,
Gianni Liti
,
Gilles Fischer
,
et al.
Journal articles
pasteur-01488132v1
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Bacterial Membrane Vesicles as a Novel Strategy for Extrusion of Antimicrobial Bismuth Drug in Helicobacter pylori
Sumith Kumar
,
Christine Schmitt
,
Olivier Gorgette
,
Martial Marbouty
,
Magalie Duchateau
,
et al.
Journal articles
pasteur-04093078v1
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Spatial reorganization of telomeres in long-lived quiescent cells
Micol Guidi
,
Myriam Ruault
,
Martial Marbouty
,
Isabelle Loïodice
,
Axel Cournac
,
et al.
Journal articles
hal-01206018v1
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Chromosome-level quality scaffolding of brown algal genomes using InstaGRAAL, a proximity ligation-based scaffolder
Lyam Baudry
,
Martial Marbouty
,
Hervé Marie-Nelly
,
Alexandre Cormier
,
Nadège Guiglielmoni
,
et al.
2021
Preprints, Working Papers, ...
hal-02947625v1
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Proximity ligation scaffolding and comparison of two Trichoderma reesei strains genomes
Etienne Jourdier
,
Lyam Baudry
,
Dante Poggi-Parodi
,
Yoan Vicq
,
Romain Koszul
,
et al.
Journal articles
hal-01581813v1
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Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization
Jérémy Gauthier
,
Hélène Boulain
,
Joke J F A van Vugt
,
Lyam Baudry
,
Emma Persyn
,
et al.
Journal articles
hal-03127732v1
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Chromosome organization by a conserved condensin-ParB system in the actinobacterium Corynebacterium glutamicum
Kati Böhm
,
Giacomo Giacomelli
,
Andreas U. Schmidt
,
Axel Imhof
,
Romain Koszul
,
et al.
Journal articles
pasteur-02612484v1
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Chromosomal resolution reveals symbiotic virus colonization of parasitic wasp genomes
Jérémy Gauthier
,
Hélène Boulain
,
Joke J.F.A. van Vugt
,
Lyam Baudry
,
Emma Persyn
,
et al.
2020
Preprints, Working Papers, ...
hal-03090838v1
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Tridimensional infiltration of DNA viruses into the host genome shows preferential contact with active chromatin
Pierrick Moreau
,
Axel Cournac
,
Gianna Aurora Palumbo
,
Martial Marbouty
,
Shogofa Mortaza
,
et al.
Journal articles
pasteur-02866759v1
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Purification of G1 daughter cells from different Saccharomycetes species through an optimized centrifugal elutriation procedure.
Martial Marbouty
,
Caroline Ermont
,
Bernard Dujon
,
Guy-Franck Richard
,
Romain Koszul
Journal articles
pasteur-01420008v1
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Chromosome-level genome assembly reveals homologous chromosomes and recombination in asexual rotifer Adineta vaga
Paul Simion
,
Jitendra Narayan
,
Antoine Houtain
,
Alessandro Derzelle
,
Lyam Baudry
,
et al.
Journal articles
hal-03406292v1
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MetaHiC phage-bacteria infection network reveals active cycling phages of the healthy human gut
Martial Marbouty
,
Agnès Thierry
,
Gael A. Millot
,
Romain Koszul
Journal articles
pasteur-03369735v1
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Normalization of a chromosomal contact map
Axel Cournac
,
Hervé Marie-Nelly
,
Martial Marbouty
,
Romain Koszul
,
Julien Mozziconacci
Journal articles
pasteur-00769663v1
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Metagenomes Binning Using Proximity-Ligation Data
Martial Marbouty
,
Romain Koszul
Book sections
pasteur-03369745v1
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Condensin- and Replication-Mediated Bacterial Chromosome Folding and Origin Condensation Revealed by Hi-C and Super-resolution Imaging.
Martial Marbouty
,
Antoine Le gall
,
Diego I Cattoni
,
Axel Cournac
,
Alan Koh
,
et al.
Journal articles
pasteur-01419993v1
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Generation of a Metagenomics Proximity Ligation 3C Library of a Mammalian Gut Microbiota
Théo Foutel-Rodier
,
Agnès Thierry
,
Romain Koszul
,
Martial Marbouty
High-Density Sequencing Applications in Microbial Molecular Genetics, 612, pp.183-195, 2018, Methods in Enzymology, 978-0-12-815993-4. ⟨10.1016/bs.mie.2018.08.001⟩
Book sections
pasteur-02866616v1
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Chromosome folding and prophage activation reveal specific genomic architecture for intestinal bacteria
Quentin Lamy-Besnier
,
Amaury Bignaud
,
Julian R Garneau
,
Marie Titecat
,
Devon E Conti
,
et al.
Journal articles
pasteur-04158849v1
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High-quality genome (re)assembly using chromosomal contact data
Hervé Marie-Nelly
,
Martial Marbouty
,
Axel Cournac
,
Jean-François Flot
,
Gianni Liti
,
et al.
Journal articles
hal-01138788v1
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Closed and high quality bacterial genomes of the Oligo Mouse Microbiota community
Quentin Lamy-Besnier
,
Romain Koszul
,
Laurent Debarbieux
,
Martial Marbouty
Journal articles
pasteur-03204821v1
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Evidence for a dual role of actin in regulating chromosome organization and dynamics in yeast.
Maya Spichal
,
Alice Brion
,
Sébastien Herbert
,
Axel Cournac
,
Martial Marbouty
,
et al.
Journal articles
pasteur-01419905v1
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Generation and Analysis of Chromosomal Contact Maps of Yeast Species.
Axel Cournac
,
Martial Marbouty
,
Julien Mozziconacci
,
Romain Koszul
Journal articles
pasteur-01419912v1
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Scaffolding bacterial genomes and probing host-virus interactions in gut microbiome by proximity ligation (chromosome capture) assay
Martial Marbouty
,
Lyam Baudry
,
Axel Cournac
,
Romain Koszul
Journal articles
pasteur-02866658v1
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Multiscale Structuring of the E. coli Chromosome by Nucleoid-Associated and Condensin Proteins
Virginia S. Lioy
,
Axel Cournac
,
Martial Marbouty
,
Stéphane Duigou
,
Julien Mozziconacci
,
et al.
Journal articles
hal-02180787v1
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High-throughput identification of viral termini and packaging mechanisms in virome datasets using PhageTermVirome
Julian R. Garneau
,
Véronique Legrand
,
Martial Marbouty
,
Maximilian O. Press
,
Dean R. Vik
,
et al.
Journal articles
pasteur-03369740v1
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Metagenome Analysis Exploiting High-Throughput Chromosome Conformation Capture (3C) Data.
Martial Marbouty
,
Romain Koszul
Journal articles
pasteur-01419974v1
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Metagenomic chromosome conformation capture (meta3C) unveils the diversity of chromosome organization in microorganisms
Martial Marbouty
,
Axel Cournac
,
Jean-François Flot
,
Hervé Marie-Nelly
,
Julien Mozziconacci
,
et al.
Journal articles
hal-01316684v1
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Genome-wide replication landscape of Candida glabrata.
Stéphane Descorps-Declère
,
Cyril Saguez
,
Axel Cournac
,
Martial Marbouty
,
Thomas Rolland
,
et al.
Journal articles
pasteur-01370696v1
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MetaTOR: A Computational Pipeline to Recover High-Quality Metagenomic Bins From Mammalian Gut Proximity-Ligation (meta3C) Libraries
Lyam Baudry
,
Théo Foutel-Rodier
,
Agnès Thierry
,
Romain Koszul
,
Martial Marbouty
Journal articles
pasteur-02866613v1
|
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