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authFullName_s : Eugene V Koonin
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Varidnaviruses in the human gut: A major expansion of the order Vinavirales

Natalya Yutin , Mike Rayko , Dmitry Antipov , Pascal Mutz , Yuri I Wolf , et al.
Viruses, 2022, 14 (9), pp.1842. ⟨10.3390/v14091842⟩
Journal articles pasteur-03759785v1
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The healthy human virome: from virus–host symbiosis to disease

Eugene V Koonin , Valerian Dolja , Mart Krupovic
Current Opinion in Virology, 2021, This review comes from a themed issue on The virome in health and disease, 47, pp.86-94. ⟨10.1016/j.coviro.2021.02.002⟩
Journal articles pasteur-03165430v1
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The logic of virus evolution

Eugene V Koonin , Valerian V Dolja , Mart Krupovic
Cell Host & Microbe, 2022, 30 (7), pp.917-929. ⟨10.1016/j.chom.2022.06.008⟩
Journal articles pasteur-03747490v1

The virome of the last eukaryotic common ancestor and eukaryogenesis

Mart Krupovic , Valerian V Dolja , Eugene V Koonin
Nature Microbiology, 2023, 8 (6), pp.1008-1017. ⟨10.1038/s41564-023-01378-y⟩
Journal articles pasteur-04117906v1
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Plant virus movement proteins originated from jelly-roll capsid proteins

Anamarija Butkovic , Valerian V Dolja , Eugene V Koonin , Mart Krupovic
PLoS Biology, 2023, 21 (6), pp.e3002157. ⟨10.1371/journal.pbio.3002157⟩
Journal articles pasteur-04145627v1
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Adnaviria: a New Realm for Archaeal Filamentous Viruses with Linear A-Form Double-Stranded DNA Genomes

Mart Krupovic , Jens H Kuhn , Fengbin Wang , Diana P Baquero , Valerian V Dolja , et al.
Journal of Virology, 2021, 95 (15), pp.e00673-21. ⟨10.1128/JVI.00673-21⟩
Journal articles pasteur-03284792v1
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Four principles to establish a universal virus taxonomy

Peter Simmonds , Evelien M Adriaenssens , F. Murilo Zerbini , Nicola G A Abrescia , Pakorn Aiewsakun , et al.
PLoS Biology, 2023, 21 (2), pp.e3001922. ⟨10.1371/journal.pbio.3001922⟩
Journal articles pasteur-03988048v1
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Recent Mobility of Casposons, Self-Synthesizing Transposons at the Origin of the CRISPR-Cas Immunity.

Mart Krupovic , Sergey Shmakov , Kira S Makarova , Patrick Forterre , Eugene V Koonin
Genome Biology and Evolution, 2016, 8 (2), pp.375-86. ⟨10.1093/gbe/evw006⟩
Journal articles hal-01443928v1
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Mining metatranscriptomes reveals a vast world of viroid-like circular RNAs

Benjamin D Lee , Uri Neri , Simon Roux , Yuri I Wolf , Antonio Pedro Camargo , et al.
Cell, 2023, 186 (3), pp.646-661.e4. ⟨10.1016/j.cell.2022.12.039⟩
Journal articles pasteur-03970755v1
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Expansion of the global RNA virome reveals diverse clades of bacteriophages

Uri Neri , Yuri I Wolf , Simon Roux , Antonio Pedro Camargo , Benjamin Lee , et al.
Cell, 2022, 185 (21), pp.4023-4037.e18. ⟨10.1016/j.cell.2022.08.023⟩
Journal articles pasteur-03816108v1

Evolutionary entanglement of mobile genetic elements and host defence systems: guns for hire

Eugene V Koonin , Kira S Makarova , Yuri I Wolf , Mart Krupovic
Nature Reviews Genetics, 2020, 21 (2), pp.119-131. ⟨10.1038/s41576-019-0172-9⟩
Journal articles pasteur-02559898v1
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The global virome: How much diversity and how many independent origins?

Eugene V Koonin , Mart Krupovic , Valerian Dolja
Environmental Microbiology, 2023, 25 (1), pp.40-44. ⟨10.1111/1462-2920.16207⟩
Journal articles pasteur-03953101v1

2022 taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales

Jens H Kuhn , Scott Adkins , Sergey V Alkhovsky , Tatjana Avšič-Županc , María A Ayllón , et al.
Archives of Virology, 2022, 167 (12), pp.2857 - 2906. ⟨10.1007/s00705-022-05546-z⟩
Journal articles pasteur-03908704v1