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authFullName_s : Claudine Médigue
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Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium rhizobium sp. NT-26.

Jérémy Andres , Florence Arsène-Ploetze , Valérie Barbe , Céline Brochier-Armanet , Jessica Cleiss-Arnold , et al.
Genome Biol Evol, 2013, 5 (5), pp.934-53. ⟨10.1093/gbe/evt061⟩
Journal articles hal-00972245v1
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Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths.

Marie Touchon , Claire Hoede , Olivier Tenaillon , Valérie Barbe , Simon Baeriswyl , et al.
PLoS Genetics, 2009, 5 (1), pp.e1000344. ⟨10.1371/journal.pgen.1000344⟩
Journal articles hal-00390293v1
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Structure, function, and evolution of the Thiomonas spp. genome.

Florence Arsène-Ploetze , Sandrine Koechler , Marie Marchal , Jean-Yves Coppée , Michael Chandler , et al.
PLoS Genetics, 2010, 6 (2), pp.e1000859. ⟨10.1371/journal.pgen.1000859⟩
Journal articles hal-00463879v1
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Genome Sequence of the Saprophyte Leptospira biflexa Provides Insights into the Evolution of Leptospira and the Pathogenesis of Leptospirosis

Mathieu Picardeau , Dieter M. Bulach , Christiane Bouchier , Richard L. Zuerner , Nora Zidane , et al.
PLoS ONE, 2008, 3 (2), pp.e1607. ⟨10.1371/journal.pone.0001607⟩
Journal articles hal-03020737v1
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Comparative analyses of Legionella species identifies genetic features of strains causing Legionnaires' disease

Laura Gomez-Valero , Christophe Rusniok , Monica Rolando , Mario Neou , Delphine Dervins-Ravault , et al.
Genome Biology, 2014, 15 (11), pp.505. ⟨10.1186/s13059-014-0505-0⟩
Journal articles hal-01329875v1

Bacillus subtilis, the model Gram-positive bacterium: 20years of annotation refinement

Rainer Borriss , Antoine Danchin , Colin R. Harwood , Claudine Médigue , Eduardo P. C. Rocha , et al.
Microbial Biotechnology, 2018, 11 (1), pp.3-17. ⟨10.1111/1751-7915.13043⟩
Journal articles cea-02291345v1
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TbD1 deletion as a driver of the evolutionary success of modern epidemic Mycobacterium tuberculosis lineages

Daria Bottai , Wafa Frigui , Fadel Sayes , Mariagrazia Di Luca , Dalila Spadoni , et al.
Nature Communications, 2020, 11 (1), pp.684. ⟨10.1038/s41467-020-14508-5⟩
Journal articles pasteur-02473990v1

Persistent biases in the amino acid composition of prokaryotic proteins

Géraldine Pascal , Claudine Médigue , Antoine Danchin
BioEssays, 2006, 28 (7), pp.726-738. ⟨10.1002/BIES.20431⟩
Journal articles istex hal-02985564v1
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A tale of two oxidation states: bacterial colonization of arsenic-rich environments.

Daniel Muller , Claudine Médigue , Sandrine Koechler , Valérie Barbe , ​mohamed Barakat , et al.
PLoS Genetics, 2007, 3 (4), pp.e53. ⟨10.1371/journal.pgen.0030053⟩
Journal articles hal-00340034v1
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PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph

Guillaume Gautreau , Adelme Bazin , Mathieu Gachet , Rémi Planel , Laura Burlot , et al.
PLoS Computational Biology, 2020, ⟨10.1371/journal.pcbi.1007732⟩
Journal articles hal-03089210v1
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A Tribute to Disorder in the Genome of the Bloom- Forming Freshwater Cyanobacterium Microcystis aeruginosa

Jean-François Humbert , Valérie Barbe , Amel Latifi , Muriel Gugger , Alexandra Calteau , et al.
PLoS ONE, 2013, 8 (8), pp.e70747. ⟨10.1371/journal.pone.0070747⟩
Journal articles bioemco-00851371v1
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Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression

Marie-Laure Rosso , Sylvie Chauvaux , Rodrigue Dessein , Caroline Laurans , Lionel Frangeul , et al.
BMC Microbiology, 2008, 8, pp.211. ⟨10.1186/1471-2180-8-211⟩
Journal articles inserm-02064904v1

A Module Located at a Chromosomal Integration Hot Spot Is Responsible for the Multidrug Resistance of a Reference Strain from Escherichia coli Clonal Group A

Mathilde Lescat , Alexandra Calteau , Claire Hoede , Valérie Barbe , Marie Touchon , et al.
Antimicrobial Agents and Chemotherapy, 2009, 53 (6), pp.2283-2288. ⟨10.1128/AAC.00123-09⟩
Journal articles hal-03612468v1
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Delineation and Analysis of Chromosomal Regions Specifying Yersinia pestis

Anne Derbise , Viviane Chenal-Francisque , Christèle Huon , Corinne Fayolle , Christian Demeure , et al.
Infection and Immunity, 2010, 78 (9), pp.3930-3941. ⟨10.1128/IAI.00281-10⟩
Journal articles pasteur-03260318v1

Universal biases in protein composition of model prokaryotes

Géraldine Pascal , Claudine Médigue , Antoine Danchin
Proteins - Structure, Function and Bioinformatics, 2005, 60 (1), pp.27-35. ⟨10.1002/PROT.20475⟩
Journal articles istex hal-02985536v1
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Reannotation of the genome sequence of Clostridium difficile strain 630.

Marc Monot , Caroline Boursaux-Eude , Marie Thibonnier , David Vallenet , Ivan Moszer , et al.
Journal of Medical Microbiology, 2011, 60 (8), pp.1193-9. ⟨10.1099/jmm.0.030452-0⟩
Journal articles pasteur-01370838v1
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Comparative genomics of pathogenic lineages of Vibrio nigripulchritudo identifies virulence-associated traits

David Goudenège , Yannick Labreuche , Evelyne Krin , Dominique Ansquer , Sophie Mangenot , et al.
ISME Journal, 2013, Integrated genomics and post-genomics approaches in microbial ecology, 7 (10), pp.1985-1996. ⟨10.1038/ismej.2013.90⟩
Journal articles pasteur-01699814v1

Transcriptome analysis of Yersinia pestis in human plasma: an approach for discovering bacterial genes involved in septicaemic plague

Sylvie Chauvaux , Marie-Laure Rosso , L. Frangeul , Céline Lacroix , Laurent Labarre , et al.
Microbiology, 2007, 153 (9), pp.3112-3124. ⟨10.1099/mic.0.2007/006213-0⟩
Journal articles pasteur-03252353v1

Enhanced structural and functional genome elucidation of the arsenite-oxidizing strain Herminiimonas arsenicoxydans by proteomics data.

Stéphanie Weiss , Christine Carapito , Jessica Cleiss , Sandrine Koechler , Evelyne Turlin , et al.
Biochimie, 2009, 91 (2), pp.192-203. ⟨10.1016/j.biochi.2008.07.013⟩
Journal articles istex hal-00370778v1
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Extensive recombination events and horizontal gene transfer shaped the Legionella pneumophila genomes

Laura Gomez-Valero , Christophe Rusniok , Sophie Jarraud , Benoit Vacherie , Zoé Rouy , et al.
BMC Genomics, 2011, 12 (1), pp.536. ⟨10.1186/1471-2164-12-536⟩
Journal articles pasteur-00642457v1
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From array-based hybridization of Helicobacter pylori isolates to the complete genome sequence of an isolate associated with MALT lymphoma.

Jean-Michel Thiberge , Caroline Boursaux-Eude , Philippe Lehours , Marie-Agnès Dillies , Sophie Creno , et al.
BMC Genomics, 2010, 11 (1), pp.368. ⟨10.1186/1471-2164-11-368⟩
Journal articles pasteur-00668206v1
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Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis

Philip Supply , Michael Marceau , Sophie Mangenot , David Roche , Carine Rouanet , et al.
Nature Genetics, 2013, 45 (2), pp.172-179. ⟨10.1038/ng.2517⟩
Journal articles pasteur-02615220v1
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Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation

Evelyne Krin , Sebastian Aguilar Pierlé , Odile Sismeiro , Bernd Jagla , Marie-Agnès Dillies , et al.
BMC Genomics, 2018, 19 (1), pp.373. ⟨10.1186/s12864-018-4716-8⟩
Journal articles pasteur-02562431v1