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authFullName_s : Agnès Thierry
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Tridimensional infiltration of DNA viruses into the host genome shows preferential contact with active chromatin

Pierrick Moreau , Axel Cournac , Gianna Aurora Palumbo , Martial Marbouty , Shogofa Mortaza , et al.
Nature Communications, 2018, 9 (1), pp.4268. ⟨10.1038/s41467-018-06739-4⟩
Journal articles pasteur-02866759v1

The complete mitochondrial genome sequence of the pathogenic yeast Candida ( Torulopsis ) glabrata

Romain Koszul , Alain Malpertuy , Lionel Frangeul , Christiane Bouchier , Patrick Wincker , et al.
FEBS Letters, 2003, 534 (1-3), pp.39-48. ⟨10.1016/s0014-5793(02)03749-3⟩
Journal articles pasteur-02868102v1
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The Formation of Neochromosomes during Experimental Evolution in the Yeast Saccharomyces cerevisiae

Agnès Thierry , Varun Khanna , Bernard Dujon
Genes, 2021, 12 (11), pp.1678. ⟨10.3390/genes12111678⟩
Journal articles pasteur-03684574v1

The yeast Fun30 and human SMARCAD1 chromatin remodellers promote DNA end resection

Thomas Costelloe , Raphaël Louge , Nozomi Tomimatsu , Bipasha Mukherjee , Emmanuelle Martini , et al.
Nature, 2012, 489 (7417), pp.581-584. ⟨10.1038/nature11353⟩
Journal articles cea-00880982v1
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MetaHiC phage-bacteria infection network reveals active cycling phages of the healthy human gut

Martial Marbouty , Agnès Thierry , Gael A. Millot , Romain Koszul
eLife, 2021, 10, pp.e60608. ⟨10.7554/eLife.60608⟩
Journal articles pasteur-03369735v1
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Serpentine: a flexible 2D binning method for differential Hi-C analysis

Lyam Baudry , Gaël A Millot , Agnès Thierry , Romain Koszul , Vittore F Scolari
Journal articles pasteur-02612482v1

Cohesin regulates homology search during recombinational DNA repair

Aurèle Piazza , Hélène Bordelet , Agnès Dumont , Agnès Thierry , Jérôme Savocco , et al.
Nature Cell Biology, 2021, 23 (11), pp.1176-1186. ⟨10.1038/s41556-021-00783-x⟩
Journal articles hal-03427219v1
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Euryarchaeal genomes are folded into SMC-dependent loops and domains, but lack transcription-mediated compartmentalization

Charlotte Cockram , Agnès Thierry , Aurore Gorlas , Roxane Lestini , Romain Koszul
Molecular Cell, 2021, 81 (3), pp.459-472.e10. ⟨10.1016/j.molcel.2020.12.013⟩
Journal articles hal-03379787v1

Genome evolution in yeasts.

Bernard Dujon , David Sherman , Gilles Fischer , Pascal Durrens , Serge Casaregola , et al.
Nature, 2004, 430 (6995), pp.35-44. ⟨10.1038/nature02579⟩
Journal articles istex hal-00104411v1

FACT mediates cohesin function on chromatin

Jonay Garcia-Luis , Luciana Lazar-Stefanita , Pilar Gutiérrez-Escribano , Agnès Thierry , Axel Cournac , et al.
Nature Structural and Molecular Biology, 2019, 26 (10), pp.970-979. ⟨10.1038/s41594-019-0307-x⟩
Journal articles pasteur-02866764v1
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Pichia sorbitophila, an Interspecies Yeast Hybrid, Reveals Early Steps of Genome Resolution After Polyploidization

Véronique Leh Louis , Laurence Despons , Anne Friedrich , Tiphaine Martin , Pascal Durrens , et al.
G3, 2012, 2 (2), pp.299 - 311. ⟨10.1534/g3.111.000745⟩
Journal articles hal-00679348v1
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Macrotene chromosomes provide insights to a new mechanism of high-order gene amplification in eukaryotes

Agnès Thierry , Varun Khanna , Sophie Créno , Ingrid Lafontaine , Laurence Ma , et al.
Nature Communications, 2015, 6, pp.6154. ⟨10.1038/ncomms7154⟩
Journal articles hal-01116452v1
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The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest.

Gotthard Kunze , Claude Gaillardin , Małgorzata Czernicka , Pascal Durrens , Tiphaine Martin , et al.
Biotechnology for Biofuels, 2014, 7 (1), pp.66. ⟨10.1186/1754-6834-7-66⟩
Journal articles pasteur-00988609v1
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Condensin-Mediated Chromosome Folding and Internal Telomeres Drive Dicentric Severing by Cytokinesis

Thomas Guerin , Claire Béneut , Natalja Barinova , Virginia López , Luciana Lazar-Stefanita , et al.
Molecular Cell, 2019, 75 (1), pp.131-144.e3. ⟨10.1016/j.molcel.2019.05.021⟩
Journal articles pasteur-02866762v1
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Neuroinvasion and anosmia are independent phenomena upon infection with SARS-CoV-2 and its variants

Guilherme Dias de Melo , Victoire Perraud , Flavio Alvarez , Alba Vieites-Prado , Seonhee Kim , et al.
Nature Communications, 2023, 14 (1), pp.4485. ⟨10.1038/s41467-023-40228-7⟩
Journal articles pasteur-04171251v1
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Large-scale Exploration of Growth Inhibition Caused by Overexpression of Genomic Fragments in Saccharomyces cerevisiae

Jeanne Boyer , Gwenaël Badis , Cécile Fairhead , Emmanuel Talla , Florence Hantraye , et al.
Genome Biology, 2004, 5 (9), pp.R72. ⟨10.1186/gb-2004-5-9-r72⟩
Journal articles pasteur-02868108v1

Purification and characterization of the in vitro activity of I-Sce I, a novel and highly specific endonuclease encoded by a group I intron

Claude Monteilhet , Arnaud Perrin , Agnès Thierry , Laurence Colleaux , Bernard Dujon
Nucleic Acids Research, 1990, 18 (6), pp.1407-13. ⟨10.1093/nar/18.6.1407⟩
Journal articles hal-02090248v1
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Generation of gene-level resolution chromosome contact maps in bacteria and archaea

Charlotte Cockram , Agnès Thierry , Romain Koszul
STAR Protocols, 2021, 2 (2), pp.100512. ⟨10.1016/j.xpro.2021.100512⟩
Journal articles pasteur-03376845v1
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Megasatellites: a new class of large tandem repeats discovered in the pathogenic yeast Candida glabrata

Guy-Franck Richard , Agnès Thierry , Bernard Dujon
Cellular and Molecular Life Sciences, 2010, 67 (5), pp.671-6. ⟨10.1007/s00018-009-0216-y⟩
Journal articles pasteur-01370699v1
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Gene level resolution of bacteria and archaea genome folding

Charlotte Cockram , Agnès Thierry , Roxane Lestini , Romain Koszul
Preprints, Working Papers, ... hal-03106900v1

Generation of a Metagenomics Proximity Ligation 3C Library of a Mammalian Gut Microbiota

Théo Foutel-Rodier , Agnès Thierry , Romain Koszul , Martial Marbouty
High-Density Sequencing Applications in Microbial Molecular Genetics, 612, pp.183-195, 2018, Methods in Enzymology, 978-0-12-815993-4. ⟨10.1016/bs.mie.2018.08.001⟩
Book sections pasteur-02866616v1

Regulation of Cohesin-Mediated Chromosome Folding by Eco1 and Other Partners

Lise Dauban , Rémi Montagne , Agnès Thierry , Luciana Lazar-Stefanita , Nathalie Bastié , et al.
Molecular Cell, 2020, 77 (6), pp.1279-1293.e4. ⟨10.1016/j.molcel.2020.01.019⟩
Journal articles pasteur-02612490v1
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Characterizing meiotic chromosomes' structure and pairing using a designer sequence optimized for Hi‐C

Héloise Muller , Vittore F Scolari , Nicolas Agier , Aurele Piazza , Agnès Thierry , et al.
Molecular Systems Biology, 2018, 14 (7), pp.e8293. ⟨10.15252/msb.20188293⟩
Journal articles hal-01890095v1
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3D organization of synthetic and scrambled chromosomes

Guillaume Mercy , Julien Mozziconacci , Vittore F Scolari , Kun Yang , Guanghou Zhao , et al.
Science, 2017, 355 (6329), pp.eaaf4597. ⟨10.1126/science.aaf4597⟩
Journal articles pasteur-01523221v1
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Nucleosome positioning on large tandem DNA repeats of the ’601’ sequence engineered in Saccharomyces cerevisiae

Astrid Lancrey , Alexandra Joubert , Evelyne Duvernois-Berthet , Etienne Routhier , Saurabh Raj , et al.
Journal of Molecular Biology, 2022, ⟨10.1016/j.jmb.2022.167497⟩
Journal articles hal-03343705v2
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Generating High-Resolution Hi-C Contact Maps of Bacteria

Agnès Thierry , Charlotte Cockram
Hi-C Data Analysis, 2301, Springer US, pp.183-195, 2021, Methods in Molecular Biology, 978-1-0716-1390-0. ⟨10.1007/978-1-0716-1390-0_9⟩
Book sections pasteur-03686079v1

XI. Yeast sequencing reports. The sequence of a 9·3 kb segment located on the left arm of the yeast chromosome XI reveals five open reading frames including the CCE1 gene and putative products related to MYO2 and to the ribosomal protein L10

Steve Pascolo , Marjan Ghazvini , Jeanne Boyer , Laurence Colleaux , Agnès Thierry , et al.
Yeast, 1992, 8 (11), pp.987-995. ⟨10.1002/yea.320081109⟩
Journal articles hal-02090246v1
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Massive Amplification at an Unselected Locus Accompanies Complex Chromosomal Rearrangements in Yeast

Agnès Thierry , Varun Khanna , Bernard Dujon
G3, 2016, 6 (5), pp.1201-1215. ⟨10.1534/g3.115.024547⟩
Journal articles hal-01331136v1
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Chromosome-scale assemblies of Acanthamoeba castellanii genomes provide insights into Legionella pneumophila infection–related chromatin reorganization

Cyril Matthey-Doret , Morgan J Colp , Pedro Escoll , Agnès Thierry , Pierrick Moreau , et al.
Genome Research, 2022, 32 (9), pp.1698-1710. ⟨10.1101/gr.276375.121⟩
Journal articles pasteur-03913195v1
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Cohesins and condensins orchestrate the 4D dynamics of yeast chromosomes during the cell cycle

Luciana Lazar-Stefanita , Vittore F Scolari , Guillaume Mercy , Héloïse Muller , Thomas M M Guérin , et al.
EMBO Journal, 2017, 36 (18), pp.2684 - 2697. ⟨10.15252/embj.201797342⟩
Journal articles hal-01596511v1