<?xml version="1.0" encoding="utf-8"?>
<TEI xmlns="http://www.tei-c.org/ns/1.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:hal="http://hal.archives-ouvertes.fr/" xmlns:gml="http://www.opengis.net/gml/3.3/" xmlns:gmlce="http://www.opengis.net/gml/3.3/ce" version="1.1" xsi:schemaLocation="http://www.tei-c.org/ns/1.0 http://api.archives-ouvertes.fr/documents/aofr-sword.xsd">
  <teiHeader>
    <fileDesc>
      <titleStmt>
        <title>HAL TEI export of pasteur-04097764</title>
      </titleStmt>
      <publicationStmt>
        <distributor>CCSD</distributor>
        <availability status="restricted">
          <licence target="https://creativecommons.org/publicdomain/zero/1.0/">CC0 1.0 - Universal</licence>
        </availability>
        <date when="2026-05-19T07:33:36+02:00"/>
      </publicationStmt>
      <sourceDesc>
        <p part="N">HAL API Platform</p>
      </sourceDesc>
    </fileDesc>
  </teiHeader>
  <text>
    <body>
      <listBibl>
        <biblFull>
          <titleStmt>
            <title xml:lang="en">Emerging highly pathogenic H5 avian influenza viruses in France during winter 2015/16: phylogenetic analyses and markers for zoonotic potential</title>
            <author role="crp">
              <persName>
                <forename type="first">François-Xavier</forename>
                <surname>Briand</surname>
              </persName>
              <email type="md5">a728af7e7f72da9e0106e6dabad24154</email>
              <email type="domain">ploufragan.afssa.fr</email>
              <ptr type="url" target="https://www.anses.fr"/>
              <idno type="idhal" notation="string">francois-xavier-briand</idno>
              <idno type="idhal" notation="numeric">923873</idno>
              <idno type="halauthorid" notation="string">511607-923873</idno>
              <idno type="ORCID">https://orcid.org/0000-0002-8094-9368</idno>
              <affiliation ref="#struct-122680"/>
              <affiliation ref="#struct-1006065"/>
              <affiliation ref="#struct-469973"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Audrey</forename>
                <surname>Schmitz</surname>
              </persName>
              <email type="md5">c791c78f0a8d839afac4e42a19cd3237</email>
              <email type="domain">ploufragan.afssa.fr</email>
              <idno type="idhal" notation="string">audreyschmitz</idno>
              <idno type="idhal" notation="numeric">1341445</idno>
              <idno type="halauthorid" notation="string">511608-1341445</idno>
              <idno type="ORCID">https://orcid.org/0009-0006-8711-0385</idno>
              <affiliation ref="#struct-122680"/>
              <affiliation ref="#struct-1006065"/>
              <affiliation ref="#struct-469973"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Katell</forename>
                <surname>Ogor</surname>
              </persName>
              <idno type="halauthorid">2355154-0</idno>
              <affiliation ref="#struct-122680"/>
              <affiliation ref="#struct-1006065"/>
              <affiliation ref="#struct-469973"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Aurélie</forename>
                <surname>Le Prioux</surname>
              </persName>
              <idno type="halauthorid">2355155-0</idno>
              <affiliation ref="#struct-122680"/>
              <affiliation ref="#struct-1006065"/>
              <affiliation ref="#struct-469973"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Cécile</forename>
                <surname>Guillou-Cloarec</surname>
              </persName>
              <idno type="halauthorid">2494198-0</idno>
              <affiliation ref="#struct-122680"/>
              <affiliation ref="#struct-1006065"/>
              <affiliation ref="#struct-469973"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Carole</forename>
                <surname>Guillemoto</surname>
              </persName>
              <email type="md5">ecf1ee362636a63b935ad686aca7d76f</email>
              <email type="domain">anses.fr</email>
              <ptr type="url" target="https://www.anses.fr"/>
              <idno type="idhal" notation="string">carole-guillemoto</idno>
              <idno type="idhal" notation="numeric">1383331</idno>
              <idno type="halauthorid" notation="string">2355152-1383331</idno>
              <idno type="ORCID">https://orcid.org/0009-0005-6800-984X</idno>
              <affiliation ref="#struct-122680"/>
              <affiliation ref="#struct-1006065"/>
              <affiliation ref="#struct-469973"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Chantal</forename>
                <surname>Allée</surname>
              </persName>
              <idno type="halauthorid">2355156-0</idno>
              <affiliation ref="#struct-122680"/>
              <affiliation ref="#struct-1006065"/>
              <affiliation ref="#struct-469973"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Marie-Odile</forename>
                <surname>Le Bras</surname>
              </persName>
              <idno type="halauthorid">2812378-0</idno>
              <affiliation ref="#struct-122680"/>
              <affiliation ref="#struct-1006065"/>
              <affiliation ref="#struct-469973"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Edouard</forename>
                <surname>Hirchaud</surname>
              </persName>
              <idno type="halauthorid">647831-0</idno>
              <affiliation ref="#struct-122680"/>
              <affiliation ref="#struct-1176335"/>
              <affiliation ref="#struct-469973"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Hélène</forename>
                <surname>Quenault</surname>
              </persName>
              <idno type="halauthorid">644769-0</idno>
              <affiliation ref="#struct-122680"/>
              <affiliation ref="#struct-1176335"/>
              <affiliation ref="#struct-469973"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Fabrice</forename>
                <surname>Touzain</surname>
              </persName>
              <email type="md5">fdc296937470d47eb9434ab36c6a92ea</email>
              <email type="domain">loria.fr</email>
              <idno type="idhal" notation="string">ftouzain</idno>
              <idno type="idhal" notation="numeric">830367</idno>
              <idno type="halauthorid" notation="string">110253-830367</idno>
              <idno type="IDREF">https://www.idref.fr/120190036</idno>
              <idno type="ORCID">https://orcid.org/0000-0002-1103-2425</idno>
              <idno type="GOOGLE SCHOLAR">https://scholar.google.fr/citations?user=AbcE5n0AAAAJ</idno>
              <idno type="VIAF">https://viaf.org/viaf/209042532</idno>
              <idno type="ISNI">http://isni.org/isni/000000035890411X</idno>
              <affiliation ref="#struct-122680"/>
              <affiliation ref="#struct-1176335"/>
              <affiliation ref="#struct-469973"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Martine</forename>
                <surname>Cherbonnel-Pansart</surname>
              </persName>
              <idno type="halauthorid">2455221-0</idno>
              <affiliation ref="#struct-122680"/>
              <affiliation ref="#struct-1006065"/>
              <affiliation ref="#struct-469973"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Evelyne</forename>
                <surname>Lemaitre</surname>
              </persName>
              <email type="md5">3a5d9fde5a181dbbee7c770d7973bb9d</email>
              <email type="domain">anses.fr</email>
              <idno type="idhal" notation="numeric">1021886</idno>
              <idno type="halauthorid" notation="string">975083-1021886</idno>
              <affiliation ref="#struct-122680"/>
              <affiliation ref="#struct-1006065"/>
              <affiliation ref="#struct-469973"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Céline</forename>
                <surname>Courtillon</surname>
              </persName>
              <email type="md5">a588f457a280d8433124da4bd7b50684</email>
              <email type="domain">anses.fr</email>
              <ptr type="url" target="https://www.anses.fr"/>
              <idno type="idhal" notation="string">ccourtillon</idno>
              <idno type="idhal" notation="numeric">790402</idno>
              <idno type="halauthorid" notation="string">1339330-790402</idno>
              <idno type="ORCID">https://orcid.org/0000-0002-3006-764X</idno>
              <affiliation ref="#struct-122680"/>
              <affiliation ref="#struct-1006065"/>
              <affiliation ref="#struct-469973"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Hélène</forename>
                <surname>Gares</surname>
              </persName>
              <idno type="halauthorid">638037-0</idno>
              <affiliation ref="#struct-426579"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Patrick</forename>
                <surname>Daniel</surname>
              </persName>
              <idno type="halauthorid">1040174-0</idno>
              <affiliation ref="#struct-494346"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Alexandre</forename>
                <surname>Fediaevsky</surname>
              </persName>
              <idno type="halauthorid">385971-0</idno>
              <affiliation ref="#struct-412037"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Pascale</forename>
                <surname>Massin</surname>
              </persName>
              <email type="md5">76475b6a9765b70f50dc3547e4d9cbfd</email>
              <email type="domain">afssa.fr</email>
              <ptr type="url" target="https://www.anses.fr"/>
              <idno type="idhal" notation="string">pascale-massin</idno>
              <idno type="idhal" notation="numeric">1499065</idno>
              <idno type="halauthorid" notation="string">399553-1499065</idno>
              <idno type="ORCID">https://orcid.org/0000-0003-1182-0736</idno>
              <affiliation ref="#struct-122680"/>
              <affiliation ref="#struct-1006065"/>
              <affiliation ref="#struct-469973"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Yannick</forename>
                <surname>Blanchard</surname>
              </persName>
              <email type="md5">8f7ff8b6bb5ceb4255b4c43ca27855f8</email>
              <email type="domain">anses.fr</email>
              <idno type="idhal" notation="numeric">1019754</idno>
              <idno type="halauthorid" notation="string">2536558-1019754</idno>
              <idno type="ORCID">https://orcid.org/0000-0002-4711-6671</idno>
              <idno type="IDREF">https://www.idref.fr/124981100</idno>
              <idno type="ISNI">http://isni.org/isni/0000000357500973</idno>
              <idno type="VIAF">https://viaf.org/viaf/200080462</idno>
              <affiliation ref="#struct-122680"/>
              <affiliation ref="#struct-1176335"/>
              <affiliation ref="#struct-469973"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Nicolas</forename>
                <surname>Eterradossi</surname>
              </persName>
              <email type="md5">49dee467b243be671f14ed2520a42eab</email>
              <email type="domain">anses.fr</email>
              <idno type="idhal" notation="numeric">923880</idno>
              <idno type="halauthorid" notation="string">629482-923880</idno>
              <idno type="ORCID">https://orcid.org/0000-0002-8719-7197</idno>
              <idno type="IDREF">https://www.idref.fr/057549036</idno>
              <idno type="VIAF">https://viaf.org/viaf/208037239</idno>
              <affiliation ref="#struct-122680"/>
              <affiliation ref="#struct-1006065"/>
              <affiliation ref="#struct-469973"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Sylvie</forename>
                <surname>van der Werf</surname>
              </persName>
              <idno type="halauthorid">2523984-0</idno>
              <affiliation ref="#struct-417138"/>
              <affiliation ref="#struct-301715"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Véronique</forename>
                <surname>Jestin</surname>
              </persName>
              <idno type="halauthorid">443372-0</idno>
              <affiliation ref="#struct-301715"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Eric</forename>
                <surname>Niqueux</surname>
              </persName>
              <email type="md5">272af72b8360ebf9d73225535dce9fbe</email>
              <email type="domain">anses.fr</email>
              <ptr type="url" target="https://www.anses.fr"/>
              <idno type="idhal" notation="string">eric-niqueux</idno>
              <idno type="idhal" notation="numeric">1297059</idno>
              <idno type="halauthorid" notation="string">1469267-1297059</idno>
              <idno type="ORCID">https://orcid.org/0009-0008-1551-1934</idno>
              <affiliation ref="#struct-122680"/>
              <affiliation ref="#struct-1006065"/>
              <affiliation ref="#struct-469973"/>
            </author>
            <editor role="depositor">
              <persName>
                <forename>Sylvie</forename>
                <surname>van der Werf</surname>
              </persName>
              <email type="md5">548b93020fd78f6b62853b198dd267d4</email>
              <email type="domain">pasteur.fr</email>
            </editor>
          </titleStmt>
          <editionStmt>
            <edition n="v1" type="current">
              <date type="whenSubmitted">2023-05-15 14:43:43</date>
              <date type="whenModified">2025-10-07 11:38:02</date>
              <date type="whenReleased">2023-05-16 15:50:13</date>
              <date type="whenProduced">2017-03-02</date>
              <date type="whenEndEmbargoed">2023-05-16</date>
              <ref type="file" target="https://pasteur.hal.science/pasteur-04097764v1/document">
                <date notBefore="2023-05-16"/>
              </ref>
              <ref type="file" subtype="publisherPaid" n="1" target="https://pasteur.hal.science/pasteur-04097764v1/file/eurosurv-22-30473-1.pdf" id="file-4097764-3568748">
                <date notBefore="2023-05-16"/>
              </ref>
              <ref type="externalLink" target="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5356430"/>
            </edition>
            <respStmt>
              <resp>contributor</resp>
              <name key="603002">
                <persName>
                  <forename>Sylvie</forename>
                  <surname>van der Werf</surname>
                </persName>
                <email type="md5">548b93020fd78f6b62853b198dd267d4</email>
                <email type="domain">pasteur.fr</email>
              </name>
            </respStmt>
          </editionStmt>
          <publicationStmt>
            <distributor>CCSD</distributor>
            <idno type="halId">pasteur-04097764</idno>
            <idno type="halUri">https://pasteur.hal.science/pasteur-04097764</idno>
            <idno type="halBibtex">briand:pasteur-04097764</idno>
            <idno type="halRefHtml">&lt;i&gt;Eurosurveillance&lt;/i&gt;, 2017, 22 (9), pii=30473. &lt;a target="_blank" href="https://dx.doi.org/10.2807/1560-7917.ES.2017.22.9.30473"&gt;&amp;#x27E8;10.2807/1560-7917.ES.2017.22.9.30473&amp;#x27E9;&lt;/a&gt;</idno>
            <idno type="halRef">Eurosurveillance, 2017, 22 (9), pii=30473. &amp;#x27E8;10.2807/1560-7917.ES.2017.22.9.30473&amp;#x27E9;</idno>
            <availability status="restricted">
              <licence target="https://creativecommons.org/licenses/by/4.0/">CC BY 4.0 - Attribution<ref corresp="#file-4097764-3568748"/></licence>
            </availability>
          </publicationStmt>
          <seriesStmt>
            <idno type="stamp" n="PASTEUR">Institut Pasteur</idno>
            <idno type="stamp" n="ANSES">Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail</idno>
            <idno type="stamp" n="UNIV-PARIS7" corresp="UNIV-PARIS">Université Denis Diderot - Paris VII</idno>
            <idno type="stamp" n="CNRS">CNRS - Centre national de la recherche scientifique</idno>
            <idno type="stamp" n="USPC">Université Sorbonne Paris Cité</idno>
            <idno type="stamp" n="AGREENIUM">Archive ouverte en agrobiosciences</idno>
            <idno type="stamp" n="UNIV-PARIS">Université Paris Cité</idno>
            <idno type="stamp" n="UP-SCIENCES">Université Paris Cité - Faculté des Sciences</idno>
            <idno type="stamp" n="PASTEUR_UMR3569" corresp="PASTEUR">Virologie</idno>
            <idno type="stamp" n="GMV-ARN" corresp="PASTEUR">Génétique moléculaire des virus à ARN</idno>
          </seriesStmt>
          <notesStmt>
            <note type="audience" n="2">International</note>
            <note type="popular" n="0">No</note>
            <note type="peer" n="1">Yes</note>
          </notesStmt>
          <sourceDesc>
            <biblStruct>
              <analytic>
                <title xml:lang="en">Emerging highly pathogenic H5 avian influenza viruses in France during winter 2015/16: phylogenetic analyses and markers for zoonotic potential</title>
                <author role="crp">
                  <persName>
                    <forename type="first">François-Xavier</forename>
                    <surname>Briand</surname>
                  </persName>
                  <email type="md5">a728af7e7f72da9e0106e6dabad24154</email>
                  <email type="domain">ploufragan.afssa.fr</email>
                  <ptr type="url" target="https://www.anses.fr"/>
                  <idno type="idhal" notation="string">francois-xavier-briand</idno>
                  <idno type="idhal" notation="numeric">923873</idno>
                  <idno type="halauthorid" notation="string">511607-923873</idno>
                  <idno type="ORCID">https://orcid.org/0000-0002-8094-9368</idno>
                  <affiliation ref="#struct-122680"/>
                  <affiliation ref="#struct-1006065"/>
                  <affiliation ref="#struct-469973"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Audrey</forename>
                    <surname>Schmitz</surname>
                  </persName>
                  <email type="md5">c791c78f0a8d839afac4e42a19cd3237</email>
                  <email type="domain">ploufragan.afssa.fr</email>
                  <idno type="idhal" notation="string">audreyschmitz</idno>
                  <idno type="idhal" notation="numeric">1341445</idno>
                  <idno type="halauthorid" notation="string">511608-1341445</idno>
                  <idno type="ORCID">https://orcid.org/0009-0006-8711-0385</idno>
                  <affiliation ref="#struct-122680"/>
                  <affiliation ref="#struct-1006065"/>
                  <affiliation ref="#struct-469973"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Katell</forename>
                    <surname>Ogor</surname>
                  </persName>
                  <idno type="halauthorid">2355154-0</idno>
                  <affiliation ref="#struct-122680"/>
                  <affiliation ref="#struct-1006065"/>
                  <affiliation ref="#struct-469973"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Aurélie</forename>
                    <surname>Le Prioux</surname>
                  </persName>
                  <idno type="halauthorid">2355155-0</idno>
                  <affiliation ref="#struct-122680"/>
                  <affiliation ref="#struct-1006065"/>
                  <affiliation ref="#struct-469973"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Cécile</forename>
                    <surname>Guillou-Cloarec</surname>
                  </persName>
                  <idno type="halauthorid">2494198-0</idno>
                  <affiliation ref="#struct-122680"/>
                  <affiliation ref="#struct-1006065"/>
                  <affiliation ref="#struct-469973"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Carole</forename>
                    <surname>Guillemoto</surname>
                  </persName>
                  <email type="md5">ecf1ee362636a63b935ad686aca7d76f</email>
                  <email type="domain">anses.fr</email>
                  <ptr type="url" target="https://www.anses.fr"/>
                  <idno type="idhal" notation="string">carole-guillemoto</idno>
                  <idno type="idhal" notation="numeric">1383331</idno>
                  <idno type="halauthorid" notation="string">2355152-1383331</idno>
                  <idno type="ORCID">https://orcid.org/0009-0005-6800-984X</idno>
                  <affiliation ref="#struct-122680"/>
                  <affiliation ref="#struct-1006065"/>
                  <affiliation ref="#struct-469973"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Chantal</forename>
                    <surname>Allée</surname>
                  </persName>
                  <idno type="halauthorid">2355156-0</idno>
                  <affiliation ref="#struct-122680"/>
                  <affiliation ref="#struct-1006065"/>
                  <affiliation ref="#struct-469973"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Marie-Odile</forename>
                    <surname>Le Bras</surname>
                  </persName>
                  <idno type="halauthorid">2812378-0</idno>
                  <affiliation ref="#struct-122680"/>
                  <affiliation ref="#struct-1006065"/>
                  <affiliation ref="#struct-469973"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Edouard</forename>
                    <surname>Hirchaud</surname>
                  </persName>
                  <idno type="halauthorid">647831-0</idno>
                  <affiliation ref="#struct-122680"/>
                  <affiliation ref="#struct-1176335"/>
                  <affiliation ref="#struct-469973"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Hélène</forename>
                    <surname>Quenault</surname>
                  </persName>
                  <idno type="halauthorid">644769-0</idno>
                  <affiliation ref="#struct-122680"/>
                  <affiliation ref="#struct-1176335"/>
                  <affiliation ref="#struct-469973"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Fabrice</forename>
                    <surname>Touzain</surname>
                  </persName>
                  <email type="md5">fdc296937470d47eb9434ab36c6a92ea</email>
                  <email type="domain">loria.fr</email>
                  <idno type="idhal" notation="string">ftouzain</idno>
                  <idno type="idhal" notation="numeric">830367</idno>
                  <idno type="halauthorid" notation="string">110253-830367</idno>
                  <idno type="IDREF">https://www.idref.fr/120190036</idno>
                  <idno type="ORCID">https://orcid.org/0000-0002-1103-2425</idno>
                  <idno type="GOOGLE SCHOLAR">https://scholar.google.fr/citations?user=AbcE5n0AAAAJ</idno>
                  <idno type="VIAF">https://viaf.org/viaf/209042532</idno>
                  <idno type="ISNI">http://isni.org/isni/000000035890411X</idno>
                  <affiliation ref="#struct-122680"/>
                  <affiliation ref="#struct-1176335"/>
                  <affiliation ref="#struct-469973"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Martine</forename>
                    <surname>Cherbonnel-Pansart</surname>
                  </persName>
                  <idno type="halauthorid">2455221-0</idno>
                  <affiliation ref="#struct-122680"/>
                  <affiliation ref="#struct-1006065"/>
                  <affiliation ref="#struct-469973"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Evelyne</forename>
                    <surname>Lemaitre</surname>
                  </persName>
                  <email type="md5">3a5d9fde5a181dbbee7c770d7973bb9d</email>
                  <email type="domain">anses.fr</email>
                  <idno type="idhal" notation="numeric">1021886</idno>
                  <idno type="halauthorid" notation="string">975083-1021886</idno>
                  <affiliation ref="#struct-122680"/>
                  <affiliation ref="#struct-1006065"/>
                  <affiliation ref="#struct-469973"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Céline</forename>
                    <surname>Courtillon</surname>
                  </persName>
                  <email type="md5">a588f457a280d8433124da4bd7b50684</email>
                  <email type="domain">anses.fr</email>
                  <ptr type="url" target="https://www.anses.fr"/>
                  <idno type="idhal" notation="string">ccourtillon</idno>
                  <idno type="idhal" notation="numeric">790402</idno>
                  <idno type="halauthorid" notation="string">1339330-790402</idno>
                  <idno type="ORCID">https://orcid.org/0000-0002-3006-764X</idno>
                  <affiliation ref="#struct-122680"/>
                  <affiliation ref="#struct-1006065"/>
                  <affiliation ref="#struct-469973"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Hélène</forename>
                    <surname>Gares</surname>
                  </persName>
                  <idno type="halauthorid">638037-0</idno>
                  <affiliation ref="#struct-426579"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Patrick</forename>
                    <surname>Daniel</surname>
                  </persName>
                  <idno type="halauthorid">1040174-0</idno>
                  <affiliation ref="#struct-494346"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Alexandre</forename>
                    <surname>Fediaevsky</surname>
                  </persName>
                  <idno type="halauthorid">385971-0</idno>
                  <affiliation ref="#struct-412037"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Pascale</forename>
                    <surname>Massin</surname>
                  </persName>
                  <email type="md5">76475b6a9765b70f50dc3547e4d9cbfd</email>
                  <email type="domain">afssa.fr</email>
                  <ptr type="url" target="https://www.anses.fr"/>
                  <idno type="idhal" notation="string">pascale-massin</idno>
                  <idno type="idhal" notation="numeric">1499065</idno>
                  <idno type="halauthorid" notation="string">399553-1499065</idno>
                  <idno type="ORCID">https://orcid.org/0000-0003-1182-0736</idno>
                  <affiliation ref="#struct-122680"/>
                  <affiliation ref="#struct-1006065"/>
                  <affiliation ref="#struct-469973"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Yannick</forename>
                    <surname>Blanchard</surname>
                  </persName>
                  <email type="md5">8f7ff8b6bb5ceb4255b4c43ca27855f8</email>
                  <email type="domain">anses.fr</email>
                  <idno type="idhal" notation="numeric">1019754</idno>
                  <idno type="halauthorid" notation="string">2536558-1019754</idno>
                  <idno type="ORCID">https://orcid.org/0000-0002-4711-6671</idno>
                  <idno type="IDREF">https://www.idref.fr/124981100</idno>
                  <idno type="ISNI">http://isni.org/isni/0000000357500973</idno>
                  <idno type="VIAF">https://viaf.org/viaf/200080462</idno>
                  <affiliation ref="#struct-122680"/>
                  <affiliation ref="#struct-1176335"/>
                  <affiliation ref="#struct-469973"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Nicolas</forename>
                    <surname>Eterradossi</surname>
                  </persName>
                  <email type="md5">49dee467b243be671f14ed2520a42eab</email>
                  <email type="domain">anses.fr</email>
                  <idno type="idhal" notation="numeric">923880</idno>
                  <idno type="halauthorid" notation="string">629482-923880</idno>
                  <idno type="ORCID">https://orcid.org/0000-0002-8719-7197</idno>
                  <idno type="IDREF">https://www.idref.fr/057549036</idno>
                  <idno type="VIAF">https://viaf.org/viaf/208037239</idno>
                  <affiliation ref="#struct-122680"/>
                  <affiliation ref="#struct-1006065"/>
                  <affiliation ref="#struct-469973"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Sylvie</forename>
                    <surname>van der Werf</surname>
                  </persName>
                  <idno type="halauthorid">2523984-0</idno>
                  <affiliation ref="#struct-417138"/>
                  <affiliation ref="#struct-301715"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Véronique</forename>
                    <surname>Jestin</surname>
                  </persName>
                  <idno type="halauthorid">443372-0</idno>
                  <affiliation ref="#struct-301715"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Eric</forename>
                    <surname>Niqueux</surname>
                  </persName>
                  <email type="md5">272af72b8360ebf9d73225535dce9fbe</email>
                  <email type="domain">anses.fr</email>
                  <ptr type="url" target="https://www.anses.fr"/>
                  <idno type="idhal" notation="string">eric-niqueux</idno>
                  <idno type="idhal" notation="numeric">1297059</idno>
                  <idno type="halauthorid" notation="string">1469267-1297059</idno>
                  <idno type="ORCID">https://orcid.org/0009-0008-1551-1934</idno>
                  <affiliation ref="#struct-122680"/>
                  <affiliation ref="#struct-1006065"/>
                  <affiliation ref="#struct-469973"/>
                </author>
              </analytic>
              <monogr>
                <idno type="halJournalId" status="VALID">863</idno>
                <idno type="issn">1560-7917</idno>
                <idno type="eissn">1025-496X</idno>
                <title level="j">Eurosurveillance</title>
                <imprint>
                  <publisher>European Centre for Disease Prevention and Control</publisher>
                  <biblScope unit="volume">22</biblScope>
                  <biblScope unit="issue">9</biblScope>
                  <biblScope unit="pp">pii=30473</biblScope>
                  <date type="datePub">2017-03-02</date>
                </imprint>
              </monogr>
              <idno type="doi">10.2807/1560-7917.ES.2017.22.9.30473</idno>
              <idno type="pubmed">28277218</idno>
              <idno type="pubmedcentral">PMC5356430</idno>
            </biblStruct>
          </sourceDesc>
          <profileDesc>
            <langUsage>
              <language ident="en">English</language>
            </langUsage>
            <textClass>
              <keywords scheme="author">
                <term xml:lang="en">Avian influenza</term>
                <term xml:lang="en">H5</term>
                <term xml:lang="en">Zoonotic Potential</term>
                <term xml:lang="en">highly pathogenic</term>
                <term xml:lang="en">phylogeny</term>
              </keywords>
              <classCode scheme="halDomain" n="sdv">Life Sciences [q-bio]</classCode>
              <classCode scheme="halTypology" n="ART">Journal articles</classCode>
              <classCode scheme="halOldTypology" n="ART">Journal articles</classCode>
              <classCode scheme="halTreeTypology" n="ART">Journal articles</classCode>
            </textClass>
            <abstract xml:lang="en">
              <p>Several new highly pathogenic (HP) H5 avian influenza virus (AIV) have been detected in poultry farms from south-western France since November 2015, among which an HP H5N1. The zoonotic potential and origin of these AIVs immediately became matters of concern. One virus of each subtype H5N1 (150169a), H5N2 (150233) and H5N9 (150236) was characterised. All proved highly pathogenic for poultry as demonstrated molecularly by the presence of a polybasic cleavage site in their HA protein – with a sequence (HQRRKR/GLF) previously unknown among avian H5 HPAI viruses – or experimentally by the in vivo demonstration of an intravenous pathogenicity index of 2.9 for the H5N1 HP isolate. Phylogenetic analyses based on the full genomes obtained by NGS confirmed that the eight viral segments of the three isolates were all part of avian Eurasian phylogenetic lineage but differed from the Gs/Gd/1/96-like lineage. The study of the genetic characteristics at specific amino acid positions relevant for modulating the adaptation to and the virulence for mammals showed that presently, these viruses possess most molecular features characteristic of AIV and lack some major characteristics required for efficient respiratory transmission to or between humans. The three isolates are therefore predicted to have no significant pandemic potential.</p>
            </abstract>
          </profileDesc>
        </biblFull>
      </listBibl>
    </body>
    <back>
      <listOrg type="structures">
        <org type="laboratory" xml:id="struct-122680" status="OLD">
          <idno type="RNSR">195723283Z</idno>
          <orgName>Laboratoire de Ploufragan - Plouzané</orgName>
          <date type="end">2018-11-01</date>
          <desc>
            <address>
              <addrLine>BP 53 - 22440 PLOUFRAGAN et BP 70 - 29280 PLOUZANÉ</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.anses.fr/</ref>
          </desc>
          <listRelation>
            <relation active="#struct-301715" type="direct"/>
          </listRelation>
        </org>
        <org type="researchteam" xml:id="struct-1006065" status="VALID">
          <orgName>Virologie, Immunologie, Parasitologie Avaires et Cunicoles</orgName>
          <orgName type="acronym">VIPAC</orgName>
          <date type="start">2010-07-01</date>
          <desc>
            <address>
              <addrLine>ANSES, Laboratoire de Ploufragan-Plouzané-NiortBP 53, 41 rue de Beaucemaine, 22440 Ploufragan</addrLine>
              <country key="FR"/>
            </address>
          </desc>
          <listRelation>
            <relation active="#struct-1006225" type="direct"/>
            <relation active="#struct-301715" type="indirect"/>
          </listRelation>
        </org>
        <org type="regroupinstitution" xml:id="struct-469973" status="VALID">
          <idno type="IdRef">191639044</idno>
          <idno type="ROR">https://ror.org/04x1a4s97</idno>
          <orgName>Université Bretagne Loire</orgName>
          <orgName type="acronym">UBL</orgName>
          <date type="start">2016-04-01</date>
          <desc>
            <address>
              <addrLine>Cité Internationale, 1 place Paul Ricoeur - CS 54417 35044 RENNES CEDEX</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">https://u-bretagneloire.fr/</ref>
          </desc>
        </org>
        <org type="researchteam" xml:id="struct-1176335" status="OLD">
          <orgName>Génétique Virale et Biosécurité</orgName>
          <orgName type="acronym">GVB</orgName>
          <date type="start">2010-07-01</date>
          <date type="end">2025-07-01</date>
          <desc>
            <address>
              <addrLine>Laboratoire de Ploufragan-Plouzané-Niort 41 rue de Beaucemaine B.P. 53 22440 Ploufragan</addrLine>
              <country key="FR"/>
            </address>
          </desc>
          <listRelation>
            <relation active="#struct-1006225" type="direct"/>
            <relation active="#struct-301715" type="indirect"/>
          </listRelation>
        </org>
        <org type="laboratory" xml:id="struct-426579" status="VALID">
          <orgName>Laboratoire départemental d'analyse et de recherche de Dordogne</orgName>
          <orgName type="acronym">LDAR 24</orgName>
          <desc>
            <address>
              <addrLine>161 avenue Winston Churchill24660 COULOUNIEIX-CHAMIERS</addrLine>
              <country key="FR"/>
            </address>
          </desc>
          <listRelation>
            <relation active="#struct-559500" type="direct"/>
          </listRelation>
        </org>
        <org type="institution" xml:id="struct-494346" status="VALID">
          <orgName>Laboratoires des Pyrénées et des Landes</orgName>
          <date type="start">2006-01-01</date>
          <desc>
            <address>
              <addrLine>88 rue des Écoles, 64150 LAGOR</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">https://labopl.com/</ref>
          </desc>
        </org>
        <org type="department" xml:id="struct-412037" status="VALID">
          <orgName>Direction Générale de l'Alimentation</orgName>
          <orgName type="acronym">DGAL</orgName>
          <desc>
            <address>
              <addrLine>Paris</addrLine>
              <country key="FR"/>
            </address>
          </desc>
          <listRelation>
            <relation active="#struct-302224" type="direct"/>
          </listRelation>
        </org>
        <org type="laboratory" xml:id="struct-417138" status="OLD">
          <idno type="IdRef">235658278</idno>
          <idno type="RNSR">200818198A</idno>
          <orgName>Génétique Moléculaire des Virus à ARN - Molecular Genetics of RNA Viruses</orgName>
          <orgName type="acronym">GMV-ARN (UMR_3569 / U-Pasteur_2)</orgName>
          <date type="start">2013-01-01</date>
          <date type="end">2019-12-31</date>
          <desc>
            <address>
              <addrLine>Département de Virologie, 25-28 rue du docteur Roux, 75724 Paris cedex 15</addrLine>
              <country key="FR"/>
            </address>
          </desc>
          <listRelation>
            <relation active="#struct-300027" type="direct"/>
            <relation name="U-Pasteur_2" active="#struct-300301" type="direct"/>
            <relation name="UMR3569" active="#struct-441569" type="direct"/>
          </listRelation>
        </org>
        <org type="institution" xml:id="struct-301715" status="VALID">
          <idno type="IdRef">148269761</idno>
          <idno type="ISNI">0000 0001 0584 7022</idno>
          <idno type="ROR">https://ror.org/0471kz689</idno>
          <idno type="Wikidata">Q392520</idno>
          <orgName>Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail</orgName>
          <orgName type="acronym">ANSES</orgName>
          <date type="start">2010-07-01</date>
          <desc>
            <address>
              <addrLine>14 rue Pierre et Marie Curie94701 MAISONS-ALFORT Cedex</addrLine>
              <country key="FR"/>
            </address>
          </desc>
        </org>
        <org type="regrouplaboratory" xml:id="struct-1006225" status="VALID">
          <idno type="RNSR">195723283Z</idno>
          <orgName>Laboratoire de Ploufragan-Plouzané-Niort [ANSES]</orgName>
          <desc>
            <address>
              <addrLine>ANSES - Laboratoire de Ploufragan-Plouzané-Niort41 rue de BeaucemaineB.P. 5322440 Ploufragan</addrLine>
              <country key="FR"/>
            </address>
          </desc>
          <listRelation>
            <relation active="#struct-301715" type="direct"/>
          </listRelation>
        </org>
        <org type="institution" xml:id="struct-559500" status="VALID">
          <orgName>Conseil départemental de la Dordogne - Service de l'archéologie</orgName>
          <date type="start">2020-09-21</date>
          <desc>
            <address>
              <addrLine>Conseil Départemental de la Dordogne - Service de l'archéologie2 Rue Paul Louis Courier24019 Périgueux Cedex</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">https://www.dordogne.fr/</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-302224" status="VALID">
          <orgName>Ministère de l'agriculture, de l'agroalimentaire et de la forêt</orgName>
          <desc>
            <address>
              <country key="FR"/>
            </address>
          </desc>
        </org>
        <org type="institution" xml:id="struct-300027" status="VALID">
          <idno type="IdRef">027936643</idno>
          <idno type="ISNI">0000 0001 2353 6535</idno>
          <idno type="ROR">https://ror.org/0495fxg12</idno>
          <orgName>Institut Pasteur [Paris]</orgName>
          <orgName type="acronym">IP</orgName>
          <date type="start">1887-06-04</date>
          <desc>
            <address>
              <addrLine>25-28, rue du docteur Roux, 75724 Paris cedex 15</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">https://www.pasteur.fr</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-300301" status="OLD">
          <idno type="IdRef">027542084</idno>
          <idno type="ISNI">0000000121514068</idno>
          <idno type="ROR">https://ror.org/02n7qrg46</idno>
          <orgName>Université Paris Diderot - Paris 7</orgName>
          <orgName type="acronym">UPD7</orgName>
          <date type="end">2019-12-31</date>
          <desc>
            <address>
              <addrLine>5 rue Thomas-Mann - 75205 Paris cedex 13</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.univ-paris-diderot.fr</ref>
          </desc>
        </org>
        <org type="regroupinstitution" xml:id="struct-441569" status="VALID">
          <idno type="IdRef">02636817X</idno>
          <idno type="ISNI">0000000122597504</idno>
          <idno type="ROR">https://ror.org/02feahw73</idno>
          <orgName>Centre National de la Recherche Scientifique</orgName>
          <orgName type="acronym">CNRS</orgName>
          <date type="start">1939-10-19</date>
          <desc>
            <address>
              <country key="FR"/>
            </address>
            <ref type="url">https://www.cnrs.fr/</ref>
          </desc>
        </org>
      </listOrg>
    </back>
  </text>
</TEI>