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Journal Articles Nature Methods Year : 2012

Fiji: an open-source platform for biological-image analysis

Jean-Yves Tinevez

Abstract

Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis. Fiji uses modern software engineering practices to combine powerful software libraries with a broad range of scripting languages to enable rapid prototyping of image-processing algorithms. Fiji facilitates the transformation of new algorithms into ImageJ plugins that can be shared with end users through an integrated update system. We propose Fiji as a platform for productive collaboration between computer science and biology research communities.

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Dates and versions

pasteur-02616466 , version 1 (24-05-2020)

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Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, et al.. Fiji: an open-source platform for biological-image analysis. Nature Methods, 2012, 9 (7), pp.676-682. ⟨10.1038/nmeth.2019⟩. ⟨pasteur-02616466⟩

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